Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_P05
         (250 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase |S...    64   2e-12
SPCC23B6.01c |||oxysterol binding protein |Schizosaccharomyces p...    23   7.8  
SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces pomb...    23   7.8  
SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    23   7.8  
SPBC947.11c |elg1||DNA replication factor C complex subunit Elg1...    23   7.8  

>SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 678

 Score = 64.5 bits (150), Expect = 2e-12
 Identities = 28/60 (46%), Positives = 42/60 (70%)
 Frame = +2

Query: 20  NPFLAQIKVNKELHKGGDRSCLHVELDISDSKMRYEAGDHVAVYPINDTKLVERLGELTG 199
           NPF +    + EL K G R+CLH+ELDI+DS MRY+ GD+ ++ P+N ++ V+ L E+ G
Sbjct: 267 NPFFSSPVRSLELFKSGSRNCLHLELDIADSGMRYQTGDYASICPMNPSQAVDDLLEVLG 326


>SPCC23B6.01c |||oxysterol binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 489

 Score = 22.6 bits (46), Expect = 7.8
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = +2

Query: 113 KMRYEAGDHVAV 148
           KMR E GDHV V
Sbjct: 216 KMRLELGDHVTV 227


>SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 262

 Score = 22.6 bits (46), Expect = 7.8
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -2

Query: 231 FMRENISSRFAPVSSPRRSTNLVSFIGYTATWSPAS 124
           F+   +++    V+SP R T   S    T TWS  S
Sbjct: 11  FLANALAAYAVSVTSPTRDTTWQSGQVNTVTWSSVS 46


>SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 462

 Score = 22.6 bits (46), Expect = 7.8
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = -2

Query: 222 ENISSRFAPVSSPRRSTNLVSFIGYTATWSPAS*RIFESEISNST 88
           +N SS F+P+ +P  S+     + ++    P+     E+   NST
Sbjct: 229 KNRSSTFSPLRTPTSSSKTFVIVDHSTPSPPSIRTKLEAFAPNST 273


>SPBC947.11c |elg1||DNA replication factor C complex subunit
           Elg1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 920

 Score = 22.6 bits (46), Expect = 7.8
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +2

Query: 167 KLVERLGELTGANLDEIFSLMNT 235
           +L+ER+GELT +++ +   L NT
Sbjct: 466 ELLERIGELTQSHIVDKSRLNNT 488


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 952,926
Number of Sequences: 5004
Number of extensions: 15380
Number of successful extensions: 38
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 45369236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)