Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_P05
(250 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1410 + 33363784-33364086,33364221-33364280,33364388-333644... 65 6e-12
08_01_0889 + 8753877-8754236,8754995-8755054,8755174-8755250,875... 64 1e-11
09_06_0260 - 21911358-21911438,21911715-21911828,21911911-219120... 57 2e-09
01_06_0610 - 30587269-30587717,30587996-30588212,30588363-305884... 31 0.17
07_03_0495 + 18756415-18756499,18757163-18757491 30 0.23
03_02_0648 - 10157911-10158104,10159621-10159789,10159897-101599... 26 4.8
09_02_0515 + 10121849-10122149,10132151-10132187,10132314-101327... 25 6.4
01_06_1027 + 33912773-33912816,33913245-33913401,33913492-339135... 25 6.4
12_01_0766 + 6950065-6950250,6950357-6950530 25 8.5
02_01_0316 + 2125283-2125687,2125768-2125881,2125986-2126099,212... 25 8.5
>04_04_1410 +
33363784-33364086,33364221-33364280,33364388-33364464,
33365032-33365089,33365179-33365262,33365358-33365394,
33365855-33365924,33366655-33366849,33366947-33367039,
33367187-33367418,33367515-33367598,33368205-33368301,
33368510-33368577,33368662-33368739,33368823-33368945,
33369059-33369172,33369288-33369368
Length = 617
Score = 65.3 bits (152), Expect = 6e-12
Identities = 32/73 (43%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Frame = +2
Query: 11 DAKNPFLAQIKVNKELHK-GGDRSCLHVELDISDSKMRYEAGDHVAVYPINDTKLVERLG 187
D +P + + V KELHK DRSC+H+E DIS + + YE GDHV VY N + VE+
Sbjct: 289 DIHHPVRSNVAVRKELHKPASDRSCIHLEFDISGTGLVYETGDHVGVYSENAIETVEQAE 348
Query: 188 ELTGANLDEIFSL 226
+L + D FS+
Sbjct: 349 KLLDLSPDTFFSV 361
>08_01_0889 +
8753877-8754236,8754995-8755054,8755174-8755250,
8755481-8755622,8755736-8755772,8755852-8755921,
8756021-8756212,8756321-8756413,8756545-8756773,
8756861-8756944,8757041-8757192,8757279-8757375,
8757576-8757725,8757813-8757890,8757982-8758104,
8758169-8758315,8758418-8758472,8758807-8758874
Length = 737
Score = 64.5 bits (150), Expect = 1e-11
Identities = 31/81 (38%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Frame = +2
Query: 11 DAKNPFLAQIKVNKELHK-GGDRSCLHVELDISDSKMRYEAGDHVAVYPINDTKLVERLG 187
DA++P A + V +ELH DRSC H+E DI+ + + YE GDHV VY N ++VE
Sbjct: 307 DAQHPCRANVAVRRELHTPASDRSCTHLEFDIAGTGLTYETGDHVGVYTENCLEVVEEAE 366
Query: 188 ELTGANLDEIFSLMNTDQEST 250
L G + + F++ ++ T
Sbjct: 367 RLLGYSPEAFFTIHADKEDGT 387
>09_06_0260 -
21911358-21911438,21911715-21911828,21911911-21912033,
21912342-21912419,21912498-21912647,21913505-21913601,
21913679-21913860,21913899-21913982,21914243-21914303,
21914414-21914506,21914588-21914782,21914937-21915006,
21915536-21915572,21915654-21915737,21915828-21915885,
21916008-21916084,21916185-21916244,21916325-21916687
Length = 668
Score = 57.2 bits (132), Expect = 2e-09
Identities = 27/57 (47%), Positives = 36/57 (63%), Gaps = 1/57 (1%)
Frame = +2
Query: 11 DAKNPFLAQIKVNKELHKGGD-RSCLHVELDISDSKMRYEAGDHVAVYPINDTKLVE 178
D ++P A + V +ELH RSC+H+E DIS + + YE GDHV VY N T+ VE
Sbjct: 309 DIQHPCRANVAVRRELHTPASYRSCIHLEFDISGTGLTYETGDHVGVYAENCTETVE 365
>01_06_0610 -
30587269-30587717,30587996-30588212,30588363-30588482,
30589092-30589202,30589300-30589374,30589940-30590031,
30590121-30590302,30590479-30590570,30591179-30591283,
30591374-30591451,30591553-30591705
Length = 557
Score = 30.7 bits (66), Expect = 0.17
Identities = 19/78 (24%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Frame = +2
Query: 2 HEDDAKNPFLAQIKVNKELHK-GGDRSCLHVELDISDSKMRYEAGDHVAVYPINDTKLVE 178
+ +D + ++ Q+ N+ L K DR H EL+ S + Y+ GD + + P V+
Sbjct: 222 YNNDKEPHYMLQMVSNRCLTKENSDRDVRHFELENPSSGITYQVGDALEILPSQSPSAVD 281
Query: 179 RLGELTGANLDEIFSLMN 232
E + D ++M+
Sbjct: 282 SFIERCKLDPDCYITVMS 299
>07_03_0495 + 18756415-18756499,18757163-18757491
Length = 137
Score = 30.3 bits (65), Expect = 0.23
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Frame = -2
Query: 216 ISSRFAPVSSPRRSTNLVSFIGYTATW--SPAS*RIFESEISNST*RQDLSPPLCNSLLT 43
++S++ S + + V GY TW P RI+ + ++T +++ PLC SLLT
Sbjct: 23 VNSKYTGESQGQIEVHCVVKYGYMDTWVTPPGVGRIWAMLVRSTT--AEITVPLCPSLLT 80
Query: 42 LI 37
L+
Sbjct: 81 LV 82
>03_02_0648 -
10157911-10158104,10159621-10159789,10159897-10159993,
10160089-10160246
Length = 205
Score = 25.8 bits (54), Expect = 4.8
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +2
Query: 59 HKGGDRSCLHVELDISDSKMRYE 127
H G D+SC+ LD +D +++ E
Sbjct: 109 HAGSDKSCVWHALDFADGELKEE 131
>09_02_0515 +
10121849-10122149,10132151-10132187,10132314-10132790,
10133184-10133733
Length = 454
Score = 25.4 bits (53), Expect = 6.4
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = -2
Query: 249 VLS*SVFMRENISSRFAPVSSPRRSTNLVSFIGYTA 142
+ S F EN FA +S R N+V F+G+++
Sbjct: 204 IKSGQAFAVENYVKEFATISLAIRHRNIVPFLGWSS 239
>01_06_1027 +
33912773-33912816,33913245-33913401,33913492-33913589,
33913680-33913775,33914422-33914681,33914778-33915088,
33915154-33915297,33915452-33915589,33915674-33915721,
33916328-33916408,33916705-33916864,33917411-33917532
Length = 552
Score = 25.4 bits (53), Expect = 6.4
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = +2
Query: 8 DDAKNPFLAQIKVNKELHKGGDRSCLHVELDISD 109
D + ++ ++ +K + GD +C H E+DI D
Sbjct: 424 DPSLGNYMKDLEKSKPVILTGDLNCAHQEIDIHD 457
>12_01_0766 + 6950065-6950250,6950357-6950530
Length = 119
Score = 25.0 bits (52), Expect = 8.5
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -3
Query: 122 NAFLSLKYPIQHEDRIYHHLYA 57
+A SL +P QH R Y+H+ A
Sbjct: 89 HAIFSLIFPHQHHARAYNHVQA 110
>02_01_0316 +
2125283-2125687,2125768-2125881,2125986-2126099,
2126271-2126561,2126658-2126768,2127317-2127370,
2127555-2127634,2127912-2128027,2128141-2128382
Length = 508
Score = 25.0 bits (52), Expect = 8.5
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = +2
Query: 83 LHVELDISDSKMRYEAGDHVAVYPINDTKLVERLGELTGANLDEIFSLM 229
L +E D +M EAG HV +T+ ++LGEL D F ++
Sbjct: 351 LRIEYD-EGIRMLKEAGVHVEAMGDLNTESEKKLGELVHTKYDTDFYML 398
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,929,599
Number of Sequences: 37544
Number of extensions: 93031
Number of successful extensions: 295
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 293
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 295
length of database: 14,793,348
effective HSP length: 61
effective length of database: 12,503,164
effective search space used: 262566444
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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