Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_P03
         (172 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces po...    41   3e-05
SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces po...    39   1e-04
SPBC16C6.12c |||Las1-like protein|Schizosaccharomyces pombe|chr ...    26   0.58 
SPAC4G8.05 |ppk14||serine/threonine protein kinase Ppk14 |Schizo...    23   4.1  
SPAC630.06c |||conserved fungal protein|Schizosaccharomyces pomb...    23   5.4  
SPAC806.05 |||DUF1763 family protein|Schizosaccharomyces pombe|c...    23   7.1  
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb...    23   7.1  
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef...    22   9.4  
SPCC285.11 |ucp10||UBA/UAS domain protein Ucp10|Schizosaccharomy...    22   9.4  
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef...    22   9.4  
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy...    22   9.4  
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc...    22   9.4  
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef...    22   9.4  

>SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 40.7 bits (91), Expect = 3e-05
 Identities = 18/24 (75%), Positives = 22/24 (91%)
 Frame = +3

Query: 96  SEREDNVYKAKLAEQAERYDEMVE 167
           + RE++VY AKLAEQAERY+EMVE
Sbjct: 3   NSRENSVYLAKLAEQAERYEEMVE 26


>SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 38.7 bits (86), Expect = 1e-04
 Identities = 18/24 (75%), Positives = 20/24 (83%)
 Frame = +3

Query: 96  SEREDNVYKAKLAEQAERYDEMVE 167
           + RED VY AKLAEQAERY+ MVE
Sbjct: 4   TSREDAVYLAKLAEQAERYEGMVE 27


>SPBC16C6.12c |||Las1-like protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 470

 Score = 26.2 bits (55), Expect = 0.58
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -2

Query: 168 LPPSRHSAQPARLTWLYTHYL-PFRTLWMINDFSLTKT 58
           LP  R +AQ A L+WLY HY  P  T    + +  T+T
Sbjct: 128 LPVLRQAAQRA-LSWLYDHYWNPAATAESEDTYDYTET 164


>SPAC4G8.05 |ppk14||serine/threonine protein kinase Ppk14
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 566

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = +1

Query: 1   ARDSVGGCGHLGELVTWRFGFS**KIIYHPQCPKGK 108
           A + + GCGH   +  W  G    +++Y     KGK
Sbjct: 390 APEVIKGCGHTSAVDWWTLGILFYEMLYATTPFKGK 425


>SPAC630.06c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 188

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 9/29 (31%), Positives = 19/29 (65%)
 Frame = +3

Query: 81  LSSTMSEREDNVYKAKLAEQAERYDEMVE 167
           +S+ +S+R  NV++  +A +  + DE+ E
Sbjct: 26  VSALLSQRLSNVFEFSIASEEVQSDEVFE 54


>SPAC806.05 |||DUF1763 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 125

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 10/26 (38%), Positives = 11/26 (42%)
 Frame = -2

Query: 114 HYLPFRTLWMINDFSLTKTESPGH*F 37
           H   FR LW     +   T  PGH F
Sbjct: 5   HASAFRQLWRAGMAAAISTRFPGHRF 30


>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1334

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +3

Query: 6    RFGWRVRPSW 35
            R GWR RP+W
Sbjct: 1229 RDGWRSRPTW 1238


>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
           Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 460

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +2

Query: 47  PGDSVLVSEKSFIIHNVRKGR*C 115
           PGD+V  + K+  + ++R+G  C
Sbjct: 302 PGDNVGFNVKNVSVKDIRRGNVC 324


>SPCC285.11 |ucp10||UBA/UAS domain protein Ucp10|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 427

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +3

Query: 93  MSEREDNVYKAKLAEQAER 149
           +  ++DN Y+A LA   ER
Sbjct: 263 LRRQQDNAYQASLARDRER 281


>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
           Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 460

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +2

Query: 47  PGDSVLVSEKSFIIHNVRKGR*C 115
           PGD+V  + K+  + ++R+G  C
Sbjct: 302 PGDNVGFNVKNVSVKDIRRGNVC 324


>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1115

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +2

Query: 47  PGDSVLVSEKSFIIHNVRK 103
           PG S+ + E++ +I N+RK
Sbjct: 245 PGSSLTLKEQANVIDNLRK 263


>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 987

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -3

Query: 65  LKPNRQVTNSPRWPHPPTE 9
           L+PN    NSP +P P ++
Sbjct: 184 LRPNSSFVNSPFFPLPSSD 202


>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
           Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 460

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +2

Query: 47  PGDSVLVSEKSFIIHNVRKGR*C 115
           PGD+V  + K+  + ++R+G  C
Sbjct: 302 PGDNVGFNVKNVSVKDIRRGNVC 324


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 733,498
Number of Sequences: 5004
Number of extensions: 10845
Number of successful extensions: 35
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 2,362,478
effective HSP length: 37
effective length of database: 2,177,330
effective search space used: 41369270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)