Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_P03
         (172 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0881 + 28461857-28462263,28462357-28462435,28462798-284629...    45   1e-05
08_02_0753 - 20805672-20805731,20805825-20805941,20806394-208065...    43   3e-05
04_04_0141 + 23079516-23079925,23080006-23080084,23080204-230803...    43   3e-05
02_04_0360 + 22353057-22353691,22354716-22355144,22355233-223553...    43   3e-05
08_02_1026 + 23743186-23743686,23743793-23743915,23744734-237448...    40   3e-04
11_06_0360 - 22699524-22699529,22699865-22699899,22700650-227007...    39   7e-04
11_05_0015 + 18403367-18403729,18404500-18404565,18405121-184052...    27   2.8  
08_02_0839 + 21693348-21694853                                         27   2.8  

>03_05_0881 +
           28461857-28462263,28462357-28462435,28462798-28462920,
           28463632-28463748,28463861-28463917
          Length = 260

 Score = 44.8 bits (101), Expect = 1e-05
 Identities = 20/29 (68%), Positives = 24/29 (82%)
 Frame = +3

Query: 81  LSSTMSEREDNVYKAKLAEQAERYDEMVE 167
           +S   + RE+NVY AKLAEQAERY+EMVE
Sbjct: 1   MSPAEASREENVYMAKLAEQAERYEEMVE 29


>08_02_0753 -
           20805672-20805731,20805825-20805941,20806394-20806516,
           20806700-20806778,20806867-20807258
          Length = 256

 Score = 43.2 bits (97), Expect = 3e-05
 Identities = 19/22 (86%), Positives = 21/22 (95%)
 Frame = +3

Query: 102 REDNVYKAKLAEQAERYDEMVE 167
           RE+NVY AKLAEQAERY+EMVE
Sbjct: 3   REENVYMAKLAEQAERYEEMVE 24


>04_04_0141 +
           23079516-23079925,23080006-23080084,23080204-23080326,
           23081655-23081771,23081886-23081945
          Length = 262

 Score = 43.2 bits (97), Expect = 3e-05
 Identities = 19/22 (86%), Positives = 21/22 (95%)
 Frame = +3

Query: 102 REDNVYKAKLAEQAERYDEMVE 167
           RE+NVY AKLAEQAERY+EMVE
Sbjct: 9   REENVYMAKLAEQAERYEEMVE 30


>02_04_0360 +
           22353057-22353691,22354716-22355144,22355233-22355311,
           22355472-22355594,22356256-22356372,22356636-22356833
          Length = 526

 Score = 43.2 bits (97), Expect = 3e-05
 Identities = 19/22 (86%), Positives = 21/22 (95%)
 Frame = +3

Query: 102 REDNVYKAKLAEQAERYDEMVE 167
           RE+NVY AKLAEQAERY+EMVE
Sbjct: 227 REENVYMAKLAEQAERYEEMVE 248


>08_02_1026 +
           23743186-23743686,23743793-23743915,23744734-23744850,
           23744948-23745001
          Length = 264

 Score = 39.9 bits (89), Expect = 3e-04
 Identities = 18/22 (81%), Positives = 20/22 (90%)
 Frame = +3

Query: 102 REDNVYKAKLAEQAERYDEMVE 167
           RE+ VY AKLAEQAERY+EMVE
Sbjct: 10  REEMVYMAKLAEQAERYEEMVE 31


>11_06_0360 -
           22699524-22699529,22699865-22699899,22700650-22700792,
           22701165-22701220,22701367-22701454,22702737-22703037,
           22704365-22704428
          Length = 230

 Score = 38.7 bits (86), Expect = 7e-04
 Identities = 19/25 (76%), Positives = 20/25 (80%)
 Frame = +3

Query: 93  MSEREDNVYKAKLAEQAERYDEMVE 167
           M ERE  V  AKLAEQAERYD+MVE
Sbjct: 1   MKEREKVVRLAKLAEQAERYDDMVE 25


>11_05_0015 +
           18403367-18403729,18404500-18404565,18405121-18405234,
           18406109-18406297,18406335-18406667,18406708-18406743,
           18407806-18407919,18408506-18408999,18409293-18409716
          Length = 710

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
 Frame = -2

Query: 171 WLPPSR-HSAQPARLTWLYTHYLPFRT 94
           +LPPS  H  QPA      T Y+PF T
Sbjct: 215 YLPPSTSHPTQPAAYVHHQTSYIPFLT 241


>08_02_0839 + 21693348-21694853
          Length = 501

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +3

Query: 78  HLSSTMSEREDNVYKAKLAEQAERYDEMV 164
           HLS  M + E+   + K AE AE+ DE+V
Sbjct: 235 HLSLVMEQEEEAEPEQKHAEAAEKADEVV 263


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,209,104
Number of Sequences: 37544
Number of extensions: 79784
Number of successful extensions: 174
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 14,793,348
effective HSP length: 36
effective length of database: 13,441,764
effective search space used: 268835280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)