Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_P03
         (172 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73910-2|CAA98138.1|  248|Caenorhabditis elegans Hypothetical pr...    33   0.020
U05038-1|AAA61872.1|  248|Caenorhabditis elegans 14-3-3 protein ...    33   0.020
Z66564-5|CAC42300.2|  198|Caenorhabditis elegans Hypothetical pr...    33   0.036
Z66564-2|CAA91474.1|  248|Caenorhabditis elegans Hypothetical pr...    33   0.036
Z75712-6|CAB00048.1| 1188|Caenorhabditis elegans Hypothetical pr...    26   4.1  
Z75712-5|CAB00045.1| 1186|Caenorhabditis elegans Hypothetical pr...    26   4.1  
AF013950-1|AAC47747.1| 1186|Caenorhabditis elegans APR-1 protein.      26   4.1  
Z99284-2|CAL49452.1|  546|Caenorhabditis elegans Hypothetical pr...    25   5.4  
Z92796-7|CAB63230.2|  546|Caenorhabditis elegans Hypothetical pr...    25   5.4  
Z74042-6|CAA98531.1|  249|Caenorhabditis elegans Hypothetical pr...    25   7.2  
AF038618-9|AAB92066.1|  304|Caenorhabditis elegans Hypothetical ...    25   9.5  

>Z73910-2|CAA98138.1|  248|Caenorhabditis elegans Hypothetical
           protein M117.2 protein.
          Length = 248

 Score = 33.5 bits (73), Expect = 0.020
 Identities = 15/22 (68%), Positives = 18/22 (81%)
 Frame = +3

Query: 105 EDNVYKAKLAEQAERYDEMVEA 170
           E+ V +AKLAEQAERYD+M  A
Sbjct: 6   EELVQRAKLAEQAERYDDMAAA 27


>U05038-1|AAA61872.1|  248|Caenorhabditis elegans 14-3-3 protein
           protein.
          Length = 248

 Score = 33.5 bits (73), Expect = 0.020
 Identities = 15/22 (68%), Positives = 18/22 (81%)
 Frame = +3

Query: 105 EDNVYKAKLAEQAERYDEMVEA 170
           E+ V +AKLAEQAERYD+M  A
Sbjct: 6   EELVQRAKLAEQAERYDDMAAA 27


>Z66564-5|CAC42300.2|  198|Caenorhabditis elegans Hypothetical
           protein F52D10.3b protein.
          Length = 198

 Score = 32.7 bits (71), Expect = 0.036
 Identities = 14/20 (70%), Positives = 18/20 (90%)
 Frame = +3

Query: 102 REDNVYKAKLAEQAERYDEM 161
           +E+ V +AKLAEQAERYD+M
Sbjct: 5   KEELVNRAKLAEQAERYDDM 24


>Z66564-2|CAA91474.1|  248|Caenorhabditis elegans Hypothetical
           protein F52D10.3a protein.
          Length = 248

 Score = 32.7 bits (71), Expect = 0.036
 Identities = 14/20 (70%), Positives = 18/20 (90%)
 Frame = +3

Query: 102 REDNVYKAKLAEQAERYDEM 161
           +E+ V +AKLAEQAERYD+M
Sbjct: 5   KEELVNRAKLAEQAERYDDM 24


>Z75712-6|CAB00048.1| 1188|Caenorhabditis elegans Hypothetical
           protein K04G2.8b protein.
          Length = 1188

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -3

Query: 59  PNRQVTNSPRWPHPPT 12
           P ++ T+SP W HP T
Sbjct: 802 PTQKTTSSPAWSHPDT 817


>Z75712-5|CAB00045.1| 1186|Caenorhabditis elegans Hypothetical
           protein K04G2.8a protein.
          Length = 1186

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -3

Query: 59  PNRQVTNSPRWPHPPT 12
           P ++ T+SP W HP T
Sbjct: 800 PTQKTTSSPAWSHPDT 815


>AF013950-1|AAC47747.1| 1186|Caenorhabditis elegans APR-1 protein.
          Length = 1186

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -3

Query: 59  PNRQVTNSPRWPHPPT 12
           P ++ T+SP W HP T
Sbjct: 800 PTQKTTSSPAWSHPDT 815


>Z99284-2|CAL49452.1|  546|Caenorhabditis elegans Hypothetical
           protein H25K10.1 protein.
          Length = 546

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -2

Query: 123 LYTHYLPFRTLWMINDFSLTKTESPGH 43
           LY H   +  +W I + +  K+E+PGH
Sbjct: 313 LYGHRHTYERMWPIYNKNPYKSENPGH 339


>Z92796-7|CAB63230.2|  546|Caenorhabditis elegans Hypothetical
           protein H25K10.1 protein.
          Length = 546

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -2

Query: 123 LYTHYLPFRTLWMINDFSLTKTESPGH 43
           LY H   +  +W I + +  K+E+PGH
Sbjct: 313 LYGHRHTYERMWPIYNKNPYKSENPGH 339


>Z74042-6|CAA98531.1|  249|Caenorhabditis elegans Hypothetical
           protein T11F9.7 protein.
          Length = 249

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +3

Query: 78  HLSSTMSEREDNVYKAKLAEQAERYDE 158
           HL  T +E E+N++  K+ E    +D+
Sbjct: 32  HLFITRAEGENNIHNPKIPEDTNDFDD 58


>AF038618-9|AAB92066.1|  304|Caenorhabditis elegans Hypothetical
           protein F42G8.5 protein.
          Length = 304

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = -2

Query: 141 PARLTWLYTHYLP 103
           PARLT + THY+P
Sbjct: 150 PARLTTITTHYVP 162


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,094,634
Number of Sequences: 27780
Number of extensions: 60954
Number of successful extensions: 164
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 12,740,198
effective HSP length: 37
effective length of database: 11,712,338
effective search space used: 222534422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)