Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_P02
(307 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 139 7e-35
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 137 3e-34
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 87 4e-19
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 58 3e-10
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 31 0.050
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 27 0.47
SPAC6G9.05 |pcd1||coenzyme A diphosphatase |Schizosaccharomyces ... 27 0.62
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom... 26 1.1
SPAC869.01 |||amidase |Schizosaccharomyces pombe|chr 1|||Manual 25 1.9
SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr... 25 2.5
SPAC17G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 2.5
SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|c... 25 3.3
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 3.3
SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1 |Schizosa... 24 4.4
SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomy... 24 5.8
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual 24 5.8
SPBC13G1.08c |ash2||Ash2-trithorax family protein|Schizosaccharo... 24 5.8
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst... 24 5.8
SPAC23H3.15c ||SPAC25H1.01c|sequence orphan|Schizosaccharomyces ... 24 5.8
SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pomb... 23 7.7
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 139 bits (337), Expect = 7e-35
Identities = 59/80 (73%), Positives = 72/80 (90%)
Frame = +1
Query: 67 DDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYAR 246
D F+TFFSETG GK+VPR+++VDLEP V+D+VRTG YR LFHPEQLITGKEDA+NNYAR
Sbjct: 46 DGGFSTFFSETGQGKYVPRSIYVDLEPNVIDQVRTGPYRDLFHPEQLITGKEDASNNYAR 105
Query: 247 GHYTIGKEIVDLVLDRIRKL 306
GHYT+GKE+VD V D+IR++
Sbjct: 106 GHYTVGKELVDEVTDKIRRI 125
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 137 bits (332), Expect = 3e-34
Identities = 56/80 (70%), Positives = 72/80 (90%)
Frame = +1
Query: 67 DDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYAR 246
+D F TFFSETG GK VPR+++VDLEP V+D+VRTG Y+ LFHPEQ++TGKEDA+NNYAR
Sbjct: 50 NDGFGTFFSETGQGKFVPRSIYVDLEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYAR 109
Query: 247 GHYTIGKEIVDLVLDRIRKL 306
GHYT+GKE++D VL+RIR++
Sbjct: 110 GHYTVGKEMIDSVLERIRRM 129
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 87.4 bits (207), Expect = 4e-19
Identities = 37/78 (47%), Positives = 53/78 (67%)
Frame = +1
Query: 70 DSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARG 249
+ N +F+E GK+VPRAV VDLEP +D V++G + LF P+ +I G+ A N +A+G
Sbjct: 45 ERLNVYFNEAAGGKYVPRAVLVDLEPGTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKG 104
Query: 250 HYTIGKEIVDLVLDRIRK 303
HYT G E+ D VLD +R+
Sbjct: 105 HYTEGAELADAVLDVVRR 122
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 58.0 bits (134), Expect = 3e-10
Identities = 28/80 (35%), Positives = 49/80 (61%), Gaps = 2/80 (2%)
Frame = +1
Query: 64 GDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKE--DAANN 237
G D + FF ++ +++PRA+ +DLEP VV+ + + TY L++PE ++ K A NN
Sbjct: 44 GVDRKDVFFYQSDDTRYIPRAILIDLEPRVVNNILSDTYGSLYNPENILITKNGGGAGNN 103
Query: 238 YARGHYTIGKEIVDLVLDRI 297
+A G Y+ + I + ++D I
Sbjct: 104 WANG-YSHAERIFEDIMDMI 122
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 30.7 bits (66), Expect = 0.050
Identities = 26/80 (32%), Positives = 45/80 (56%), Gaps = 3/80 (3%)
Frame = +2
Query: 32 TRCQLTRPSGVET-TPSTRSSARPELASTFPVPSSSILN-PL*LTRSALAHTDSCFIQNN 205
T Q+T P+ V + TP T SS L S+ P+ SSSILN +T S++ ++ + ++
Sbjct: 368 TSTQITSPTAVNSSTPITSSSV---LNSSTPITSSSILNTSTPITSSSVLNSSTPITSSS 424
Query: 206 -LSLVRRMPQTTMLVVTTPL 262
L+ + +T+L +TP+
Sbjct: 425 ILNSSTPITSSTVLNSSTPI 444
Score = 28.3 bits (60), Expect = 0.27
Identities = 22/63 (34%), Positives = 32/63 (50%)
Frame = +2
Query: 68 TTPSTRSSARPELASTFPVPSSSILNPL*LTRSALAHTDSCFIQNNLSLVRRMPQTTMLV 247
+TP T S+A L ++ P+ SSS+LN S+ A S I ++ L P T+ V
Sbjct: 1269 STPITSSTA---LNTSIPITSSSVLNSSTPITSSTALNTSTSITSSSVLNSSTPITSSTV 1325
Query: 248 VTT 256
V T
Sbjct: 1326 VNT 1328
Score = 27.5 bits (58), Expect = 0.47
Identities = 22/63 (34%), Positives = 32/63 (50%)
Frame = +2
Query: 68 TTPSTRSSARPELASTFPVPSSSILNPL*LTRSALAHTDSCFIQNNLSLVRRMPQTTMLV 247
+TP T S+A L ++ P+ SSS+LN S+ A S I ++ L P T+ V
Sbjct: 501 STPITSSTA---LNTSTPITSSSVLNSSTPITSSTALNTSTSITSSSVLNSSTPITSSTV 557
Query: 248 VTT 256
V T
Sbjct: 558 VNT 560
Score = 27.5 bits (58), Expect = 0.47
Identities = 22/63 (34%), Positives = 32/63 (50%)
Frame = +2
Query: 68 TTPSTRSSARPELASTFPVPSSSILNPL*LTRSALAHTDSCFIQNNLSLVRRMPQTTMLV 247
+TP T S+A L ++ P+ SSS+LN S+ A S I ++ L P T+ V
Sbjct: 2613 STPITSSTA---LNTSTPITSSSVLNSSTPITSSTALNTSTSITSSSVLNSSTPITSSTV 2669
Query: 248 VTT 256
V T
Sbjct: 2670 VNT 2672
Score = 27.5 bits (58), Expect = 0.47
Identities = 22/63 (34%), Positives = 32/63 (50%)
Frame = +2
Query: 68 TTPSTRSSARPELASTFPVPSSSILNPL*LTRSALAHTDSCFIQNNLSLVRRMPQTTMLV 247
+TP T S+A L ++ P+ SSS+LN S+ A S I ++ L P T+ V
Sbjct: 2841 STPITSSTA---LNTSTPITSSSVLNSSTPITSSTALNTSTSITSSSVLNSSTPITSSTV 2897
Query: 248 VTT 256
V T
Sbjct: 2898 VNT 2900
Score = 27.5 bits (58), Expect = 0.47
Identities = 22/63 (34%), Positives = 32/63 (50%)
Frame = +2
Query: 68 TTPSTRSSARPELASTFPVPSSSILNPL*LTRSALAHTDSCFIQNNLSLVRRMPQTTMLV 247
+TP T S+A L ++ P+ SSS+LN S+ A S I ++ L P T+ V
Sbjct: 2937 STPITSSTA---LNTSTPITSSSVLNSSTPITSSTALNTSTSITSSSVLNSSTPITSSTV 2993
Query: 248 VTT 256
V T
Sbjct: 2994 VNT 2996
Score = 27.1 bits (57), Expect = 0.62
Identities = 22/63 (34%), Positives = 31/63 (49%)
Frame = +2
Query: 68 TTPSTRSSARPELASTFPVPSSSILNPL*LTRSALAHTDSCFIQNNLSLVRRMPQTTMLV 247
+TP T SS L ++ P+ SSS+LN S+ A S I ++ L P T+ V
Sbjct: 993 STPITSSSV---LNTSTPITSSSVLNSSTAITSSTALNTSTPITSSSVLNSSTPITSSTV 1049
Query: 248 VTT 256
V T
Sbjct: 1050 VNT 1052
Score = 26.6 bits (56), Expect = 0.82
Identities = 22/63 (34%), Positives = 32/63 (50%)
Frame = +2
Query: 68 TTPSTRSSARPELASTFPVPSSSILNPL*LTRSALAHTDSCFIQNNLSLVRRMPQTTMLV 247
+TP T S+A L ++ P+ SSS+LN S+ A S I ++ L P T+ V
Sbjct: 1773 STPITSSTA---LNTSTPITSSSVLNSSTPITSSTALNTSTPITSSSVLNSSTPITSSTV 1829
Query: 248 VTT 256
V T
Sbjct: 1830 VNT 1832
Score = 25.8 bits (54), Expect = 1.4
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Frame = +2
Query: 68 TTPSTRSSARPELASTFPVPSSSILNPL*LTRSALAHTDSCFIQNNLSLVRRMPQTTMLV 247
+TP T S+A L ++ P+ SSS+LN S+ S I ++ +L P T+ V
Sbjct: 3381 STPITSSTA---LNTSTPITSSSVLNSSTPITSSTVVNSSTPITSSTALNTSTPITSSTV 3437
Query: 248 V--TTPL 262
V +TP+
Sbjct: 3438 VNSSTPI 3444
Score = 25.4 bits (53), Expect = 1.9
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Frame = +2
Query: 68 TTPSTRSSARPELASTFPVPSSSILNPL*LTRSALAHTDSCFIQNNLSLVRRMPQTTMLV 247
+TP T SS L S+ P+ SSSILN S+ S I ++ +L P T+ V
Sbjct: 405 STPITSSSV---LNSSTPITSSSILNSSTPITSSTVLNSSTPITSSTALNTSTPITSSSV 461
Query: 248 V--TTPL 262
+ +TP+
Sbjct: 462 LNSSTPI 468
Score = 25.4 bits (53), Expect = 1.9
Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Frame = +2
Query: 68 TTPSTRSSARPELASTFPVPSSSILNPL*LTRSALAHTDSCFIQNNLSLVRRMPQT--TM 241
+TP T SS L S+ P+ SSS+LN S+ A S I ++ L P T T
Sbjct: 633 STPITSSSV---LNSSTPITSSSVLNSSTPITSSTALNTSTPITSSSVLNSSTPITSSTA 689
Query: 242 LVVTTPL 262
L +TP+
Sbjct: 690 LNTSTPI 696
Score = 25.4 bits (53), Expect = 1.9
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Frame = +2
Query: 68 TTPSTRSSARPELASTFPVPSSSILNPL*LTRSALAHTDSCFIQNNLSLVRRMPQT--TM 241
+TP T S+A L ++ P+ SSS+LN S+ A S I ++ L P T T
Sbjct: 681 STPITSSTA---LNTSTPITSSSVLNSSTAITSSTALNTSTPITSSSVLNSSTPITSSTA 737
Query: 242 LVVTTPL 262
L +TP+
Sbjct: 738 LNTSTPI 744
Score = 25.4 bits (53), Expect = 1.9
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Frame = +2
Query: 68 TTPSTRSSARPELASTFPVPSSSILNPL*LTRSALAHTDSCFIQNNLSLVRRMPQTTMLV 247
+TP T SS L S+ P+ SSS+LN S+ S I ++ +L P T+ V
Sbjct: 981 STPITSSSV---LNSSTPITSSSVLNTSTPITSSSVLNSSTAITSSTALNTSTPITSSSV 1037
Query: 248 V--TTPL 262
+ +TP+
Sbjct: 1038 LNSSTPI 1044
Score = 25.4 bits (53), Expect = 1.9
Identities = 21/63 (33%), Positives = 31/63 (49%)
Frame = +2
Query: 68 TTPSTRSSARPELASTFPVPSSSILNPL*LTRSALAHTDSCFIQNNLSLVRRMPQTTMLV 247
+TP T S+A L ++ P+ SSS+LN S+ S I ++ L P T+ V
Sbjct: 1065 STPITSSTA---LNTSTPITSSSVLNSSTPITSSTVLNSSTPITSSSVLNSSTPITSSTV 1121
Query: 248 VTT 256
V T
Sbjct: 1122 VNT 1124
Score = 25.4 bits (53), Expect = 1.9
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Frame = +2
Query: 68 TTPSTRSSARPELASTFPVPSSSILNPL*LTRSALAHTDSCFIQNNLSLVRRMPQTTMLV 247
+TP T SS L S+ P+ SSS+LN S+ S I ++ +L +P T+ V
Sbjct: 1233 STPITSSSI---LNSSTPITSSSVLNSSTPITSSTVVNSSTPITSSTALNTSIPITSSSV 1289
Query: 248 V--TTPL 262
+ +TP+
Sbjct: 1290 LNSSTPI 1296
Score = 25.4 bits (53), Expect = 1.9
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Frame = +2
Query: 68 TTPSTRSSARPELASTFPVPSSSILNPL*LTRSALAHTDSCFIQNNLSLVRRMPQTTMLV 247
+TP T S+A L ++ P+ SSS+LN S+ S I ++ +L P T+ V
Sbjct: 1605 STPITSSTA---LNTSTPITSSSVLNSSTPITSSTVLNSSTPITSSTALNTSPPITSSTV 1661
Query: 248 V--TTPL 262
V +TP+
Sbjct: 1662 VNSSTPI 1668
Score = 25.4 bits (53), Expect = 1.9
Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Frame = +2
Query: 68 TTPSTRSSARPELASTFPVPSSSILN-PL*LTRSALAHTDSCFIQNNLSLVRRMPQTTML 244
+TP T S+A L ++ P+ SSS+LN +T S++ +T S I ++ L P T+
Sbjct: 1965 STPITSSTA---LNTSTPITSSSVLNSSTPITSSSVLNT-STPITSSSVLNSSTPITSST 2020
Query: 245 VVTT 256
VV T
Sbjct: 2021 VVNT 2024
Score = 25.4 bits (53), Expect = 1.9
Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Frame = +2
Query: 68 TTPSTRSSARPELASTFPVPSSSILN-PL*LTRSALAHTDSCFIQNNLSLVRRMPQTTML 244
+TP T S+A L ++ P+ SSS+LN +T S + +T S I ++ L P T+
Sbjct: 2301 STPITSSTA---LNTSTPITSSSVLNSSTPITSSTVVNT-STPITSSSVLNSSTPITSST 2356
Query: 245 VVTT 256
VV T
Sbjct: 2357 VVNT 2360
Score = 25.4 bits (53), Expect = 1.9
Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Frame = +2
Query: 68 TTPSTRSSARPELASTFPVPSSSILN-PL*LTRSALAHTDSCFIQNNLSLVRRMPQTTML 244
+TP T S+A L ++ P+ SSS+LN +T S + +T S I ++ L P T+
Sbjct: 2709 STPITSSTA---LNTSTPITSSSVLNSSTPITSSTVVNT-STPITSSSVLNSSTPITSST 2764
Query: 245 VVTT 256
VV T
Sbjct: 2765 VVNT 2768
Score = 25.0 bits (52), Expect = 2.5
Identities = 21/63 (33%), Positives = 31/63 (49%)
Frame = +2
Query: 68 TTPSTRSSARPELASTFPVPSSSILNPL*LTRSALAHTDSCFIQNNLSLVRRMPQTTMLV 247
+TP T S+ + S+ P+ SSS+LN S+ A S I ++ L P T+ V
Sbjct: 837 STPITSSTV---VNSSTPITSSSVLNSSTPITSSTALNTSTPITSSSVLNSSTPITSSTV 893
Query: 248 VTT 256
V T
Sbjct: 894 VNT 896
Score = 25.0 bits (52), Expect = 2.5
Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Frame = +2
Query: 32 TRCQLTRPSGVET-TPSTRSSARPELASTFPVPSSSILNPL*LTRSALAHTDSCFIQNNL 208
T +T S V + TP T S+A L ++ P+ SSS+LN S+ A S I ++
Sbjct: 1568 TSTPITSSSVVNSSTPITSSTA---LNTSTPITSSSVLNSSTPITSSTALNTSTPITSSS 1624
Query: 209 SLVRRMPQT--TMLVVTTPL 262
L P T T+L +TP+
Sbjct: 1625 VLNSSTPITSSTVLNSSTPI 1644
Score = 25.0 bits (52), Expect = 2.5
Identities = 21/63 (33%), Positives = 31/63 (49%)
Frame = +2
Query: 68 TTPSTRSSARPELASTFPVPSSSILNPL*LTRSALAHTDSCFIQNNLSLVRRMPQTTMLV 247
+TP T S+ + S+ P+ SSS+LN S+ A S I ++ L P T+ V
Sbjct: 2445 STPITSSTV---VNSSTPITSSSVLNSSTPITSSTALNTSTPITSSSVLNSSTPITSSTV 2501
Query: 248 VTT 256
V T
Sbjct: 2502 VNT 2504
Score = 24.6 bits (51), Expect = 3.3
Identities = 21/63 (33%), Positives = 31/63 (49%)
Frame = +2
Query: 68 TTPSTRSSARPELASTFPVPSSSILNPL*LTRSALAHTDSCFIQNNLSLVRRMPQTTMLV 247
+TP T S+A L ++ P+ SSS+LN S+ S I ++ L P T+ V
Sbjct: 729 STPITSSTA---LNTSTPITSSSVLNSSTPITSSSILNSSTPITSSSVLNSSTPITSSTV 785
Query: 248 VTT 256
V T
Sbjct: 786 VNT 788
Score = 24.6 bits (51), Expect = 3.3
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Frame = +2
Query: 68 TTPSTRSSARPELASTFPVPSSSILN-PL*LTRSALAHTDSCFIQNNLSLVRRMPQTTML 244
+TP T S+A L ++ P+ SSS+LN +T S + +T S I ++ + P T+
Sbjct: 1125 STPITSSTA---LNTSTPITSSSVLNSSTPITSSTVVNT-STPITSSTVVNSSTPITSST 1180
Query: 245 VVTT 256
VV T
Sbjct: 1181 VVNT 1184
Score = 24.6 bits (51), Expect = 3.3
Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Frame = +2
Query: 68 TTPSTRSSARPELASTFPVPSSSILN-PL*LTRSALAHTDSCFIQNN-LSLVRRMPQTTM 241
+TP T SS L S+ P+ SSS+LN +T S + +T + ++ ++ + +T
Sbjct: 1533 STPITSSSV---LNSSTPITSSSVLNSSTPITSSTVVNTSTPITSSSVVNSSTPITSSTA 1589
Query: 242 LVVTTPL 262
L +TP+
Sbjct: 1590 LNTSTPI 1596
Score = 24.6 bits (51), Expect = 3.3
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Frame = +2
Query: 68 TTPSTRSSARPELASTFPVPSSSILNPL*LTRSALAHTDSCFIQNNLSLVRRMPQT--TM 241
+TP T S+A L ++ P+ SSS+LN S+ A S I ++ L P T T
Sbjct: 1749 STPITSSTA---LNTSTPITSSSVLNSSTPITSSTALNTSTPITSSSVLNSSTPITSSTA 1805
Query: 242 LVVTTPL 262
L +TP+
Sbjct: 1806 LNTSTPI 1812
Score = 24.6 bits (51), Expect = 3.3
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Frame = +2
Query: 68 TTPSTRSSARPELASTFPVPSSSILNPL*LTRSALAHTDSCFIQNNLSLVRRMPQT--TM 241
+TP T S+A L ++ P+ SSS+LN S+ A S I ++ L P T T+
Sbjct: 1845 STPITSSTA---LNTSTPITSSSVLNSSTPITSSTALNTSTPITSSSVLNSSTPITSSTV 1901
Query: 242 LVVTTPL 262
L +TP+
Sbjct: 1902 LNSSTPI 1908
Score = 24.6 bits (51), Expect = 3.3
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Frame = +2
Query: 68 TTPSTRSSARPELASTFPVPSSSILNPL*LTRSALAHTDSCFIQNNLSLVRRMPQT--TM 241
+TP T S+A L ++ P+ SSS+LN S+ A S I ++ L P T T+
Sbjct: 2037 STPITSSTA---LNTSTPITSSSVLNSSTPITSSTALNTSTPITSSSVLNSSTPITSSTV 2093
Query: 242 LVVTTPL 262
L +TP+
Sbjct: 2094 LNSSTPI 2100
Score = 24.6 bits (51), Expect = 3.3
Identities = 20/63 (31%), Positives = 31/63 (49%)
Frame = +2
Query: 68 TTPSTRSSARPELASTFPVPSSSILNPL*LTRSALAHTDSCFIQNNLSLVRRMPQTTMLV 247
+TP T S+A L ++ P+ SSS+LN S+ S I ++ + P T+ V
Sbjct: 2157 STPITSSTA---LNTSTPITSSSVLNSSTPITSSTVVNSSTPITSSTVVNTSTPITSSTV 2213
Query: 248 VTT 256
V T
Sbjct: 2214 VNT 2216
Score = 24.6 bits (51), Expect = 3.3
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +2
Query: 77 STRSSARPELASTFPVPSSSILN-PL*LTRSALAHTDSCFIQNNLSLVRRMPQTTMLVVT 253
ST ++ L S+ P+ SSS+LN +T S + +T S I ++ L P T+ VV
Sbjct: 3225 STAITSSSVLNSSTPITSSSVLNSSTPITSSTVVNT-STPITSSSVLNSSTPITSSTVVN 3283
Query: 254 T 256
T
Sbjct: 3284 T 3284
Score = 24.2 bits (50), Expect = 4.4
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Frame = +2
Query: 68 TTPSTRSSARPELASTFPVPSSSILN-PL*LTRSALAHTDSCFIQNN-LSLVRRMPQTTM 241
+TP T SS L S+ P+ SSS+LN +T S + +T + + ++ + +T
Sbjct: 453 STPITSSSV---LNSSTPITSSSVLNSSTPITSSTVVNTSTPITSSTVVNSSTPITSSTA 509
Query: 242 LVVTTPL 262
L +TP+
Sbjct: 510 LNTSTPI 516
Score = 24.2 bits (50), Expect = 4.4
Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Frame = +2
Query: 32 TRCQLTRPSGVET-TPSTRSSARPELASTFPVPSSSILNPL*LTRSALAHTDSCFIQNNL 208
T +TR S + + TP T S+ L S+ P+ SSS+LN S+ A S I ++
Sbjct: 584 TSTPITRYSVLNSSTPITSSTV---LNSSTPITSSSVLNSSTPITSSTALNTSTPITSSS 640
Query: 209 SLVRRMPQTTMLVV--TTPL 262
L P T+ V+ +TP+
Sbjct: 641 VLNSSTPITSSSVLNSSTPI 660
Score = 24.2 bits (50), Expect = 4.4
Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Frame = +2
Query: 68 TTPSTRSSARPELASTFPVPSSSILN-PL*LTRSALAHTDSCFIQNNLSLVRRMPQTTML 244
+TP T S+ L S+ P+ SSS+LN +T S + +T S I ++ + P T+
Sbjct: 1389 STPITSSTV---LNSSTPITSSSVLNSSTPITSSTVVNT-STPITSSTVVNSSTPITSST 1444
Query: 245 VVTT 256
VV T
Sbjct: 1445 VVNT 1448
Score = 24.2 bits (50), Expect = 4.4
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Frame = +2
Query: 68 TTPSTRSSARPELASTFPVPSSSILNPL*LTRSALAHTDSCFIQNNLSLVRRMPQTTMLV 247
+TP T S+A L ++ P+ SSS+LN S+ S I ++ +L P T+ V
Sbjct: 1869 STPITSSTA---LNTSTPITSSSVLNSSTPITSSTVLNSSTPITSSTALNTSTPITSSSV 1925
Query: 248 V--TTPL 262
+ +TP+
Sbjct: 1926 LNSSTPI 1932
Score = 24.2 bits (50), Expect = 4.4
Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Frame = +2
Query: 68 TTPSTRSSARPELASTFPVPSSSILN-PL*LTRSALAHTDSCFIQNN-LSLVRRMPQTTM 241
+TP T SS L S+ P+ SSS+LN +T S + ++ + ++ L+ + +T
Sbjct: 1917 STPITSSSV---LNSSTPITSSSVLNSSTPITSSTVVNSSTPITSSSVLNSSTPITSSTA 1973
Query: 242 LVVTTPL 262
L +TP+
Sbjct: 1974 LNTSTPI 1980
Score = 24.2 bits (50), Expect = 4.4
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Frame = +2
Query: 68 TTPSTRSSARPELASTFPVPSSSILNPL*LTRSALAHTDSCFIQNNLSLVRRMPQTTMLV 247
+TP T S+A L ++ P+ SSS+LN S+ S I ++ +L P T+ V
Sbjct: 2061 STPITSSTA---LNTSTPITSSSVLNSSTPITSSTVLNSSTPITSSTALNTSTPITSSSV 2117
Query: 248 V--TTPL 262
+ +TP+
Sbjct: 2118 LNSSTPI 2124
Score = 24.2 bits (50), Expect = 4.4
Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Frame = +2
Query: 68 TTPSTRSSARPELASTFPVPSSSILN-PL*LTRSALAHTDSCFIQNN-LSLVRRMPQTTM 241
+TP T SS L S+ P+ SSS+LN +T S + ++ + ++ L+ + +T
Sbjct: 2109 STPITSSSV---LNSSTPITSSSVLNSSTPITSSTVVNSSTPITSSSVLNSSTPITSSTA 2165
Query: 242 LVVTTPL 262
L +TP+
Sbjct: 2166 LNTSTPI 2172
Score = 24.2 bits (50), Expect = 4.4
Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Frame = +2
Query: 68 TTPSTRSSARPELASTFPVPSSSILN-PL*LTRSALAHTDSCFIQNNLSLVRRMPQTTML 244
+TP T S+ L S+ P+ SSS+LN +T S + +T S I ++ + P T+
Sbjct: 2229 STPITSSTV---LNSSTPITSSSVLNSSTPITSSTVVNT-STPITSSTVVNSSTPITSST 2284
Query: 245 VVTT 256
VV T
Sbjct: 2285 VVNT 2288
Score = 24.2 bits (50), Expect = 4.4
Identities = 21/75 (28%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Frame = +2
Query: 44 LTRPSGVETTPSTRSSARPELASTFPVPSSSILN-PL*LTRSALAHTDSCFIQNN-LSLV 217
+T + V T+ S SS+ L S+ P+ SSS+LN +T S + ++ + ++ L+
Sbjct: 2412 ITSSTVVNTSTSITSSS--VLNSSTPITSSSVLNSSTPITSSTVVNSSTPITSSSVLNSS 2469
Query: 218 RRMPQTTMLVVTTPL 262
+ +T L +TP+
Sbjct: 2470 TPITSSTALNTSTPI 2484
Score = 24.2 bits (50), Expect = 4.4
Identities = 20/63 (31%), Positives = 30/63 (47%)
Frame = +2
Query: 68 TTPSTRSSARPELASTFPVPSSSILNPL*LTRSALAHTDSCFIQNNLSLVRRMPQTTMLV 247
+TP T S+ L ++ P+ SSS+LN S+ S I ++ L P T+ V
Sbjct: 3201 STPITSSTT---LNTSTPITSSSVLNSSTAITSSSVLNSSTPITSSSVLNSSTPITSSTV 3257
Query: 248 VTT 256
V T
Sbjct: 3258 VNT 3260
Score = 23.8 bits (49), Expect = 5.8
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Frame = +2
Query: 68 TTPSTRSSARPELASTFPVPSSSILNPL*LTRSALAHTDSCFIQNNLSLVRRMPQTTMLV 247
+TP T S+A L ++ P+ SSS+LN S+ S I ++ +L P T+ V
Sbjct: 621 STPITSSTA---LNTSTPITSSSVLNSSTPITSSSVLNSSTPITSSTALNTSTPITSSSV 677
Query: 248 V--TTPL 262
+ +TP+
Sbjct: 678 LNSSTPI 684
Score = 23.8 bits (49), Expect = 5.8
Identities = 23/68 (33%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Frame = +2
Query: 68 TTPSTRSSARPELASTFPVPSSSILN-PL*LTRSALAHTDSCFIQNNLSLVRRMPQTTML 244
+TP T S+ L S+ P+ SSS+LN +T S + +T S I ++ +L P T+
Sbjct: 1089 STPITSSTV---LNSSTPITSSSVLNSSTPITSSTVVNT-STPITSSTALNTSTPITSSS 1144
Query: 245 VV--TTPL 262
V+ +TP+
Sbjct: 1145 VLNSSTPI 1152
Score = 23.8 bits (49), Expect = 5.8
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Frame = +2
Query: 68 TTPSTRSSARPELASTFPVPSSSILNPL*LTRSALAHTDSCFIQNNLSLVRRMPQTTMLV 247
+TP T SS L S+ P+ SSS+LN S+ S I ++ + P T+ V
Sbjct: 1977 STPITSSSV---LNSSTPITSSSVLNTSTPITSSSVLNSSTPITSSTVVNTSTPITSSTV 2033
Query: 248 V--TTPL 262
V +TP+
Sbjct: 2034 VNSSTPI 2040
Score = 23.8 bits (49), Expect = 5.8
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Frame = +2
Query: 68 TTPSTRSSARPELASTFPVPSSSILNPL*LTRSALAHTDSCFIQNNLSLVRRMPQTTMLV 247
+TP T S+ + S+ P+ SSS+LN S+ A S I ++ L P T+ V
Sbjct: 2133 STPITSSTV---VNSSTPITSSSVLNSSTPITSSTALNTSTPITSSSVLNSSTPITSSTV 2189
Query: 248 V--TTPL 262
V +TP+
Sbjct: 2190 VNSSTPI 2196
Score = 23.4 bits (48), Expect = 7.7
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = +2
Query: 68 TTPSTRSSARPELASTFPVPSSSILN 145
+TP T SS L S+ P+ SSSILN
Sbjct: 1221 STPITSSSV---LNSSTPITSSSILN 1243
Score = 23.4 bits (48), Expect = 7.7
Identities = 23/68 (33%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Frame = +2
Query: 68 TTPSTRSSARPELASTFPVPSSSILN-PL*LTRSALAHTDSCFIQNNLSLVRRMPQTTML 244
+TP T S+A L ++ P+ SSS+LN +T S + +T S I ++ + P T+
Sbjct: 1689 STPITSSTA---LNTSTPITSSSVLNSSTPITSSTVVNT-STPITSSTVVNSSTPITSST 1744
Query: 245 VV--TTPL 262
VV +TP+
Sbjct: 1745 VVNSSTPI 1752
Score = 23.4 bits (48), Expect = 7.7
Identities = 20/63 (31%), Positives = 31/63 (49%)
Frame = +2
Query: 68 TTPSTRSSARPELASTFPVPSSSILNPL*LTRSALAHTDSCFIQNNLSLVRRMPQTTMLV 247
+TP T S+ + S+ P+ SSS+LN S+ A S I ++ L P T+ V
Sbjct: 1941 STPITSSTV---VNSSTPITSSSVLNSSTPITSSTALNTSTPITSSSVLNSSTPITSSSV 1997
Query: 248 VTT 256
+ T
Sbjct: 1998 LNT 2000
Score = 23.4 bits (48), Expect = 7.7
Identities = 19/67 (28%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Frame = +2
Query: 68 TTPSTRSSARPELASTFPVPSSSILN-PL*LTRSALAHTDSCFIQNN-LSLVRRMPQTTM 241
+TP T S+A L ++ P+ SSS+LN +T S + +T + + ++ + +T+
Sbjct: 2769 STPITSSTA---LNTSTPITSSSVLNSSTPITSSTVVNTSTPITSSTVVNSSTPITSSTV 2825
Query: 242 LVVTTPL 262
L +TP+
Sbjct: 2826 LNSSTPI 2832
Score = 23.4 bits (48), Expect = 7.7
Identities = 20/63 (31%), Positives = 30/63 (47%)
Frame = +2
Query: 68 TTPSTRSSARPELASTFPVPSSSILNPL*LTRSALAHTDSCFIQNNLSLVRRMPQTTMLV 247
+TP T S+ L S+ P+ SSS+LN S+ A S I ++ L P T+
Sbjct: 2817 STPITSSTV---LNSSTPITSSSVLNSSTPITSSTALNTSTPITSSSVLNSSTPITSSTA 2873
Query: 248 VTT 256
+ T
Sbjct: 2874 LNT 2876
Score = 23.4 bits (48), Expect = 7.7
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Frame = +2
Query: 77 STRSSARPELASTFPVPSSSILNPL*LTRSALAHTDSCFIQNNLSLVRRMPQTTMLVV-- 250
ST ++ L S+ PV SSS+LN S+ S I ++ +L P T+ V+
Sbjct: 3345 STAITSSSILNSSTPVTSSSVLNSSTPITSSTVVNSSTPITSSTALNTSTPITSSSVLNS 3404
Query: 251 TTPL 262
+TP+
Sbjct: 3405 STPI 3408
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 27.5 bits (58), Expect = 0.47
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = +2
Query: 41 QLTRPSGVETTPSTRSSARPELASTFPVPSSS 136
Q +PSGVE T ++R++A+ + ST + S +
Sbjct: 42 QAVKPSGVEPTNTSRANAQKKTESTGKITSEA 73
>SPAC6G9.05 |pcd1||coenzyme A diphosphatase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 285
Score = 27.1 bits (57), Expect = 0.62
Identities = 14/50 (28%), Positives = 26/50 (52%)
Frame = +2
Query: 101 ELASTFPVPSSSILNPL*LTRSALAHTDSCFIQNNLSLVRRMPQTTMLVV 250
E+ F VP +S LNP S +TD +++ N+ + R+ T +++
Sbjct: 218 EVKDLFYVPLTSFLNPKHQKISRFRNTDLLYVEFNIDKIPRIWGITAVIL 267
>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 963
Score = 26.2 bits (55), Expect = 1.1
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +2
Query: 53 PSGVETTPSTRSSARPELASTFPV 124
P+ VETTPST +SA + + F +
Sbjct: 350 PANVETTPSTATSAPKKSTAPFAI 373
>SPAC869.01 |||amidase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 583
Score = 25.4 bits (53), Expect = 1.9
Identities = 11/24 (45%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Frame = -2
Query: 297 DAVEDQVYDFLSNGVVT-TSIVVC 229
DA DQ+ +++ NG++T T IV C
Sbjct: 68 DATIDQLQNYMENGILTSTDIVHC 91
>SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 697
Score = 25.0 bits (52), Expect = 2.5
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +2
Query: 161 RSALAHTDSCFIQNNLSLVRRMPQT 235
+S + HT++ NN SL+RR+ T
Sbjct: 605 KSLIQHTNNLLQSNNASLLRRLAAT 629
>SPAC17G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 433
Score = 25.0 bits (52), Expect = 2.5
Identities = 14/44 (31%), Positives = 18/44 (40%)
Frame = +2
Query: 8 PPVLQEFGTRCQLTRPSGVETTPSTRSSARPELASTFPVPSSSI 139
PPV + F P G ET + S E S F P S++
Sbjct: 360 PPVAEHFSNETFSASPKGAETDVKSEGSNNHEQGS-FNEPKSNV 402
>SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 649
Score = 24.6 bits (51), Expect = 3.3
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +1
Query: 217 KEDAANNYARGHYTIGKEIVDLV 285
+E ANN+ RGH I K+ D +
Sbjct: 599 RERKANNFFRGHIEIDKKTKDFL 621
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 24.6 bits (51), Expect = 3.3
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +2
Query: 47 TRPSGVETTPSTRSSARPELASTFPVPSSSILN 145
++PS T+ ST SSA P S+ + SSS+++
Sbjct: 185 SQPSVSSTSSSTFSSAAPTSTSSSYLSSSSVVS 217
>SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 669
Score = 24.2 bits (50), Expect = 4.4
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = -2
Query: 219 LTSDKLFWMKQLSVCASADLVNYSGFKIDEDGTGNVLASSGLAEERVEGVVST 61
L D+L + L + SA + G+ D+D NV+A G ++R E + T
Sbjct: 327 LLYDQLTPITPLMLALSAGTPAFRGYLADQDCRWNVIA--GAVDDRTEEEMKT 377
>SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 802
Score = 23.8 bits (49), Expect = 5.8
Identities = 15/53 (28%), Positives = 27/53 (50%)
Frame = +1
Query: 118 PRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIV 276
PR VF +++ V T ++FHPE+ ++ + YA YT+ K ++
Sbjct: 214 PRTVFEEVQEPV-----TNVDAKVFHPEK----RKRSREGYADDDYTLHKTVL 257
>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1496
Score = 23.8 bits (49), Expect = 5.8
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +1
Query: 208 ITGKEDAANNYARGHYTIGKEIVDLVL 288
IT + NN GH T+G + V L L
Sbjct: 883 ITDFSRSVNNQRNGHLTVGSDAVCLSL 909
>SPBC13G1.08c |ash2||Ash2-trithorax family
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 652
Score = 23.8 bits (49), Expect = 5.8
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = -1
Query: 301 CGCGRGPSLRFPFQWCS 251
C CG+ +LRFP CS
Sbjct: 43 CYCGKDRNLRFPDLQCS 59
>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
Pst2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1075
Score = 23.8 bits (49), Expect = 5.8
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +2
Query: 41 QLTRPSGVETTPSTRSSARPELASTF 118
Q T PSG +TPST + +L T+
Sbjct: 117 QFTTPSGPVSTPSTYVATYNDLPCTY 142
>SPAC23H3.15c ||SPAC25H1.01c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 325
Score = 23.8 bits (49), Expect = 5.8
Identities = 10/31 (32%), Positives = 15/31 (48%)
Frame = +1
Query: 22 GIRHEVPTDKTIGGGDDSFNTFFSETGAGKH 114
G R + T+GGG +++ S T G H
Sbjct: 184 GSRQKATPSDTVGGGAYDYSSSGSHTHGGSH 214
>SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 368
Score = 23.4 bits (48), Expect = 7.7
Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 5/55 (9%)
Frame = +2
Query: 38 CQLTRPSGVETTPSTRSSARPELASTFP-----VPSSSILNPL*LTRSALAHTDS 187
C ++RP +TP + +S P ++ P PSS++ T++ A S
Sbjct: 70 CMVSRPKTSTSTPKSAASPAPNPPASVPEKKVEAPSSTVAESTSTTQTVAAAAPS 124
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.317 0.139 0.409
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,466,408
Number of Sequences: 5004
Number of extensions: 29827
Number of successful extensions: 184
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 77794588
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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