Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_O23
         (163 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC757.08 |||exosome subunit Rrp45 |Schizosaccharomyces pombe|c...    24   3.1  
SPAC13G7.06 |met16||phosphoadenosine phosphosulfate reductase|Sc...    23   5.4  
SPBC17A3.09c |||lipoate-protein ligase A |Schizosaccharomyces po...    22   9.5  

>SPCC757.08 |||exosome subunit Rrp45 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 291

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = +2

Query: 11  RTIDRCIRRARGPPASSLTT*TGLNRWTIACSAH 112
           R I++ +RR+      SL   +G   W +  S H
Sbjct: 105 RLIEKAVRRSNALDTESLCIISGQKCWHVRASVH 138


>SPAC13G7.06 |met16||phosphoadenosine phosphosulfate
           reductase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 266

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = +2

Query: 32  RRARGPPASSLTT*TGLNRWTIACSAHVQWFYIYIHIYLVQNNV 163
           RR++G    SL     L+   +  +    W +  +H Y++ NNV
Sbjct: 158 RRSQGGERGSLPI-VQLDGPVLKINPLANWSFTEVHNYIITNNV 200


>SPBC17A3.09c |||lipoate-protein ligase A |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 363

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = -3

Query: 158 YFELNIYVYIYRTTAHEHC 102
           YF L +  Y+Y  +  +HC
Sbjct: 36  YFNLALENYLYENSTAKHC 54


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 614,151
Number of Sequences: 5004
Number of extensions: 7994
Number of successful extensions: 14
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 2,362,478
effective HSP length: 34
effective length of database: 2,192,342
effective search space used: 41654498
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)