Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_O23
         (163 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0743 + 26847652-26849424                                         28   0.89 
02_04_0185 - 20748206-20748405,20749067-20749232,20749373-207494...    28   1.2  
01_06_1096 + 34502668-34503036,34504294-34505317,34505388-34505656     26   4.7  

>11_06_0743 + 26847652-26849424
          Length = 590

 Score = 28.3 bits (60), Expect = 0.89
 Identities = 12/18 (66%), Positives = 13/18 (72%)
 Frame = +2

Query: 8   GRTIDRCIRRARGPPASS 61
           GR   RC RRAR PP+SS
Sbjct: 304 GRCSPRCRRRARAPPSSS 321


>02_04_0185 -
           20748206-20748405,20749067-20749232,20749373-20749471,
           20749487-20749561,20749663-20749743,20750121-20750274,
           20750330-20750425,20750518-20750727,20750746-20750957
          Length = 430

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +2

Query: 8   GRTIDRCIRRARGPPASSLTT*TGLNRWTIACSAHV 115
           GR +DR +R +R     SL    G + W++    H+
Sbjct: 133 GRVVDRGLRESRAVDMESLCVVAGKHVWSVRVDLHI 168


>01_06_1096 + 34502668-34503036,34504294-34505317,34505388-34505656
          Length = 553

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +3

Query: 12  EQLIAASGALADPRPHLSLLKLDLIVGQSLAVLMCS 119
           +  IA S AL    PHLS + +  ++GQS A   CS
Sbjct: 194 DNFIANSEALPYA-PHLSAVSISNLLGQSFASKSCS 228


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,234,478
Number of Sequences: 37544
Number of extensions: 57066
Number of successful extensions: 111
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 14,793,348
effective HSP length: 34
effective length of database: 13,516,852
effective search space used: 256820188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)