Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_O23
         (163 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC020728-1|AAH20728.2|  384|Homo sapiens coenzyme Q2 homolog, pr...    28   4.8  
BC008804-1|AAH08804.1|  371|Homo sapiens COQ2 protein protein.         28   4.8  
AJ621061-1|CAF18241.1|  421|Homo sapiens para-hydroxybenzoate--p...    28   4.8  

>BC020728-1|AAH20728.2|  384|Homo sapiens coenzyme Q2 homolog,
           prenyltransferase (yeast) protein.
          Length = 384

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 5/45 (11%)
 Frame = +3

Query: 6   RGEQLIAASGALAD--PRP---HLSLLKLDLIVGQSLAVLMCSGS 125
           RG QL  ++ A+ D  PRP   +L L++LD  +G  L  L C+ S
Sbjct: 65  RGRQLSLSAAAVVDSAPRPLQPYLRLMRLDKPIGTWLLYLPCTWS 109


>BC008804-1|AAH08804.1|  371|Homo sapiens COQ2 protein protein.
          Length = 371

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 5/45 (11%)
 Frame = +3

Query: 6   RGEQLIAASGALAD--PRP---HLSLLKLDLIVGQSLAVLMCSGS 125
           RG QL  ++ A+ D  PRP   +L L++LD  +G  L  L C+ S
Sbjct: 52  RGRQLSLSAAAVVDSAPRPLQPYLRLMRLDKPIGTWLLYLPCTWS 96


>AJ621061-1|CAF18241.1|  421|Homo sapiens
           para-hydroxybenzoate--polyprenyltransferase,
           mitochondrial precursor protein.
          Length = 421

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 5/45 (11%)
 Frame = +3

Query: 6   RGEQLIAASGALAD--PRP---HLSLLKLDLIVGQSLAVLMCSGS 125
           RG QL  ++ A+ D  PRP   +L L++LD  +G  L  L C+ S
Sbjct: 102 RGRQLSLSAAAVVDSAPRPLQPYLRLMRLDKPIGTWLLYLPCTWS 146


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,221,082
Number of Sequences: 237096
Number of extensions: 348049
Number of successful extensions: 570
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 565
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 570
length of database: 76,859,062
effective HSP length: 33
effective length of database: 69,034,894
effective search space used: 1380697880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)