Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_O22
(266 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy... 29 0.083
SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyce... 26 1.0
SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual 26 1.0
SPACUNK4.11c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 1.8
SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces... 24 3.1
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce... 24 3.1
SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual 24 3.1
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 24 4.1
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ... 24 4.1
SPCC1020.08 |||wybutosine biosynthesis protein Tyw1|Schizosaccha... 23 7.2
SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3 |Schizosa... 23 7.2
SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1 |Schizosacch... 23 7.2
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual 23 7.2
SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac... 23 9.6
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 23 9.6
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 23 9.6
>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1142
Score = 29.5 bits (63), Expect = 0.083
Identities = 12/48 (25%), Positives = 25/48 (52%)
Frame = +2
Query: 17 ELEHLRRMNKQLDDELKTQRDVYRKTEVGFMGDLDSIRKELNRACKNN 160
E++HL + KQ++D + RDV + + + +RK++ + N
Sbjct: 679 EVDHLDLLRKQIEDSISLHRDVRDSKDAHILKVSNKLRKQILHLVEQN 726
>SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 844
Score = 25.8 bits (54), Expect = 1.0
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +2
Query: 50 LDDELKTQRDVYRKTEVGFMGDLDSIRKELNRACKN 157
L+ +LK Q+D+ ++T L+ IRK N++ KN
Sbjct: 92 LEQDLKIQKDLVKETHARLEQRLEEIRKR-NQSRKN 126
>SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 25.8 bits (54), Expect = 1.0
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = -3
Query: 264 HFLLHCAKAFCVNVSCFSRD 205
HF C++ F VN+ C RD
Sbjct: 342 HFCAGCSEVFNVNIPCIYRD 361
>SPACUNK4.11c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 188
Score = 25.0 bits (52), Expect = 1.8
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +2
Query: 41 NKQLDDELKTQRDVYRKTEVGFMGDLDSIRKELNRACKNNQEL 169
NK+L +E ++DV + EV G + EL + QEL
Sbjct: 88 NKELGEENVDEKDVSKNEEVDVNGTKITDTSELTERERRKQEL 130
>SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 815
Score = 24.2 bits (50), Expect = 3.1
Identities = 14/30 (46%), Positives = 15/30 (50%)
Frame = -2
Query: 145 PVQFFPDTIQISHEAHLCLPINIPLRLQFI 56
P FF D ISH + CLP I LQ I
Sbjct: 755 PYAFFHDIPSISHFLNKCLPPTILDLLQQI 784
>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 964
Score = 24.2 bits (50), Expect = 3.1
Identities = 7/19 (36%), Positives = 15/19 (78%)
Frame = +2
Query: 2 HEVKKELEHLRRMNKQLDD 58
H++K + +HL+R +KQ+ +
Sbjct: 348 HQLKAQQQHLQRQSKQMSE 366
>SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual
Length = 554
Score = 24.2 bits (50), Expect = 3.1
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -2
Query: 136 FFPDTIQISHEAHLCLPINIPLRLQFI 56
+FPD + A L PI IPL + FI
Sbjct: 506 YFPDESKYGIYAPLFAPILIPLLISFI 532
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 23.8 bits (49), Expect = 4.1
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = -2
Query: 157 IFARPVQFFPDTIQISH 107
IF +P++ P TIQI H
Sbjct: 1299 IFGKPLRALPFTIQIGH 1315
>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1044
Score = 23.8 bits (49), Expect = 4.1
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = +2
Query: 5 EVKKELEHLRRMNKQLDDELKTQRDVYRKTEVGFMGDLDSIRKELNRA 148
E+K +E ++ KQLDD +K Q + + +L+ K LN +
Sbjct: 699 EIKDFIEEHSKLTKQLDD-IKNQFGIISSKNRDLLSELEK-SKSLNNS 744
>SPCC1020.08 |||wybutosine biosynthesis protein
Tyw1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 688
Score = 23.0 bits (47), Expect = 7.2
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +2
Query: 56 DELKTQRDVYRKTEVGFMGDLDS 124
DE+K QR+V R VG G + S
Sbjct: 50 DEVKKQREVKRFKRVGKRGKIGS 72
>SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1029
Score = 23.0 bits (47), Expect = 7.2
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -2
Query: 166 LLIIFARPVQFFPDTIQISHEAHLCLPINIPL 71
LL++FA P P Q++H + L IPL
Sbjct: 100 LLVLFAEPDIDLPFVSQVAHNILVWLENLIPL 131
>SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 593
Score = 23.0 bits (47), Expect = 7.2
Identities = 13/25 (52%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Frame = -1
Query: 215 FPEIPPPPLIH-C*SLLALDYFCTP 144
F EI P I C LLAL+ FC P
Sbjct: 526 FKEILSPAAIDLCQKLLALNPFCRP 550
>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1489
Score = 23.0 bits (47), Expect = 7.2
Identities = 8/20 (40%), Positives = 16/20 (80%)
Frame = +2
Query: 116 LDSIRKELNRACKNNQELEV 175
L+ +RKE+ + ++N+E+EV
Sbjct: 739 LEKMRKEIVQQVRDNEEIEV 758
>SPAC18B11.10 |tup11||transcriptional corepressor
Tup11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 614
Score = 22.6 bits (46), Expect = 9.6
Identities = 12/50 (24%), Positives = 24/50 (48%)
Frame = +2
Query: 14 KELEHLRRMNKQLDDELKTQRDVYRKTEVGFMGDLDSIRKELNRACKNNQ 163
+E+E R+ + ++ K+ R+ Y K +L+ + E N A N+
Sbjct: 48 QEIEAFRKTVDDMYEKQKSIRETYEKDINKLKRELEELGVEANTASYRNR 97
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 22.6 bits (46), Expect = 9.6
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = -1
Query: 233 ASTLAAFPEIPPPP 192
A + AFP PPPP
Sbjct: 938 AGVMPAFPPPPPPP 951
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 22.6 bits (46), Expect = 9.6
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = -2
Query: 157 IFARPVQFFPDTIQISH 107
IFA+P++ P IQI H
Sbjct: 1247 IFAKPLRALPFHIQIGH 1263
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 911,163
Number of Sequences: 5004
Number of extensions: 13553
Number of successful extensions: 54
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 55545318
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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