Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_O21
(339 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC428.08c |clr4||histone H3 methyltransferase Clr4|Schizosacch... 46 1e-06
SPAC664.01c |swi6|SPAC824.10c|chromodomain protein Swi6|Schizosa... 42 3e-05
SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces po... 41 6e-05
SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce... 37 0.001
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac... 32 0.028
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po... 29 0.15
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo... 26 1.8
SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|... 25 2.4
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 24 5.5
SPBC1539.07c |||glutathione-dependent formaldehyde dehydrogenase... 24 5.5
SPAC23H4.12 |alp13||Clr6 histone deacetylase complex subunit Alp... 24 7.3
SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2 |S... 24 7.3
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1... 24 7.3
SPAC3H5.04 |aar2||U5 snRNP-associated protein Aar2|Schizosacchar... 23 9.6
>SPBC428.08c |clr4||histone H3 methyltransferase
Clr4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 490
Score = 46.4 bits (105), Expect = 1e-06
Identities = 24/45 (53%), Positives = 30/45 (66%), Gaps = 3/45 (6%)
Frame = +1
Query: 91 EEEYEVEKIIDSKKIKG---KLHYLIRWKGYSAGNDTWEPEITLS 216
+EEYEVE+I+D K + KL Y IRW YS+ +DTWEP LS
Sbjct: 5 QEEYEVERIVDEKLDRNGAVKL-YRIRWLNYSSRSDTWEPPENLS 48
>SPAC664.01c |swi6|SPAC824.10c|chromodomain protein
Swi6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 328
Score = 41.5 bits (93), Expect = 3e-05
Identities = 23/64 (35%), Positives = 38/64 (59%), Gaps = 4/64 (6%)
Frame = +1
Query: 52 AKKRKSGKDKKITEEEYEVEKIIDSKKIK--GKLHYLIRWKGYSAGND-TWEPEITLS-C 219
AK+ + G++++ E+EY VEK++ + + G YL++W+GY +D TW E S C
Sbjct: 67 AKEEEGGEEEE--EDEYVVEKVLKHRMARKGGGYEYLLKWEGYDDPSDNTWSSEADCSGC 124
Query: 220 PDLI 231
LI
Sbjct: 125 KQLI 128
>SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 380
Score = 40.7 bits (91), Expect = 6e-05
Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 4/59 (6%)
Frame = +1
Query: 67 SGKDKKITEEEYEVEKIIDS--KKIKGKLHYLIRWKGYSAGND-TW-EPEITLSCPDLI 231
SG + K ++EE+ VE I+DS KK Y ++W+GY +D TW + E C +LI
Sbjct: 165 SGSEDKNSDEEFAVEMILDSRMKKDGSGFQYYLKWEGYDDPSDNTWNDEEDCAGCLELI 223
>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 960
Score = 36.7 bits (81), Expect = 0.001
Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Frame = +1
Query: 100 YEVEKIIDSKKIKGKLH-YLIRWKGYSAGNDTWEPEITL 213
YEVE I+ + K ++ Y I+W GY ++TWEPE L
Sbjct: 22 YEVEDILADRVNKNGINEYYIKWAGYDWYDNTWEPEQNL 60
>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1373
Score = 31.9 bits (69), Expect = 0.028
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Frame = +1
Query: 79 KKITEEEYE-VEKIIDSK-KIKGKLHYLIRWKGYSAGNDTWE 198
K + EEY+ VE+I+ S+ +GK Y ++W+ N TWE
Sbjct: 296 KNMLFEEYKIVERIVASETNEEGKTEYFVKWRQLPYDNCTWE 337
Score = 27.9 bits (59), Expect = 0.45
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +1
Query: 136 KGKLHYLIRWKGYSAGNDTWEPEITLS 216
K YLI+W+ S ++TWE TLS
Sbjct: 227 KSSYQYLIKWQEVSHLHNTWEDYSTLS 253
>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1057
Score = 29.5 bits (63), Expect = 0.15
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +1
Query: 73 KDKKITEEEYEVEKIIDSKKIKGKLHYLIRWKGYSAGNDTW 195
+D + E VE +I +K+K Y I+W G +TW
Sbjct: 811 RDITVNGERRRVEALIGRQKLKKSFQYEIKWFGKPHKYNTW 851
>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1388
Score = 25.8 bits (54), Expect = 1.8
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = +1
Query: 79 KKITEEEY-EVEKIIDSK-KIKGKLHYLIRWKGYSAGNDTWE 198
K+ EEY +V++I+ G + YL++WK TWE
Sbjct: 280 KRENYEEYKQVDRIVAKHLNSDGSVEYLVKWKQLLYDFCTWE 321
Score = 24.2 bits (50), Expect = 5.5
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +1
Query: 151 YLIRWKGYSAGNDTWEPEITLS 216
+LI+W +S + TWEP +S
Sbjct: 216 FLIKWVNFSHLHCTWEPYNNIS 237
>SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 537
Score = 25.4 bits (53), Expect = 2.4
Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = +1
Query: 61 RKSGKDKKITE-EEYEVEKIIDSKKIKGKLHYLIRWKGYSAGND 189
+K G+ K E +E V K++ + ++GK+ + I KG S+ ND
Sbjct: 428 KKGGRLLKGGEPDEASVAKMVLNDFMRGKIPWFIGPKGLSSSND 471
>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 230
Score = 24.2 bits (50), Expect = 5.5
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -1
Query: 117 YFFHLILFLRYFFIFAGFTFLS 52
+FF L+ FL + F F+ FLS
Sbjct: 119 FFFFLLFFLSFSFSFSFLFFLS 140
>SPBC1539.07c |||glutathione-dependent formaldehyde dehydrogenase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 378
Score = 24.2 bits (50), Expect = 5.5
Identities = 9/28 (32%), Positives = 17/28 (60%)
Frame = +1
Query: 76 DKKITEEEYEVEKIIDSKKIKGKLHYLI 159
DK++ +++ IDS K+K + Y+I
Sbjct: 229 DKEVYAKKFGATDFIDSSKVKDLVQYVI 256
>SPAC23H4.12 |alp13||Clr6 histone deacetylase complex subunit
Alp13|Schizosaccharomyces pombe|chr 1|||Manual
Length = 337
Score = 23.8 bits (49), Expect = 7.3
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +1
Query: 100 YEVEKIIDSKKIKGKLHYLIRWKGYSAGNDTW 195
YE KI+D++ YLI +KG+ D W
Sbjct: 20 YEA-KIVDTEMKGDVTTYLIHYKGWKNSWDEW 50
>SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 316
Score = 23.8 bits (49), Expect = 7.3
Identities = 12/21 (57%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
Frame = +1
Query: 79 KKITEEEYEVEKII-DSKKIK 138
KK+ EE EVEKI+ D ++IK
Sbjct: 72 KKLEEEGEEVEKILRDEERIK 92
>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 881
Score = 23.8 bits (49), Expect = 7.3
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = -1
Query: 120 NYFFHLILFLRYFFIFAGFTFLS 52
NYF IL L Y GFTF +
Sbjct: 858 NYFKGSILVLAYLVSMLGFTFFN 880
>SPAC3H5.04 |aar2||U5 snRNP-associated protein
Aar2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 346
Score = 23.4 bits (48), Expect = 9.6
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Frame = +1
Query: 85 ITEEEYEVEKIIDSKKIKGKLHYLIRWK-GYSAG 183
I + YE K+ + +KG +H L W Y AG
Sbjct: 16 IDQSSYEASKLPGIRNVKGGIH-LFTWSPTYPAG 48
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.309 0.131 0.388
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 894,975
Number of Sequences: 5004
Number of extensions: 13234
Number of successful extensions: 34
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 98026656
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)
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