Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_O21
(339 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0031 - 7534327-7534480,7535546-7535649,7535724-7535793,753... 42 9e-05
03_02_0234 + 6625417-6626184,6626314-6626339,6626435-6626531,662... 40 7e-04
10_01_0028 - 359988-359996,360228-360332,360415-360536,360676-36... 38 0.002
10_05_0046 + 8516043-8516425,8517908-8518019,8518276-8518377,851... 34 0.025
12_01_0286 - 2127622-2127897,2128611-2128997,2129195-2129550,212... 29 1.2
11_01_0283 - 2095291-2095566,2095962-2096348,2096523-2096881,209... 29 1.2
02_05_1082 - 33976038-33978035 27 2.8
06_01_0584 - 4178391-4178732,4178854-4178915,4180361-4180481,418... 26 6.6
12_02_0652 - 21527768-21528328,21528980-21529738,21530151-215302... 26 8.7
02_04_0518 + 23601355-23602498,23603481-23603779 26 8.7
01_06_1556 - 38222071-38222708,38222795-38222822,38222950-382230... 26 8.7
01_01_0365 - 2859617-2859722,2860047-2860489,2862232-2862391,286... 26 8.7
>05_03_0031 - 7534327-7534480,7535546-7535649,7535724-7535793,
7535889-7535932,7536042-7536146,7536223-7536344,
7536807-7536894,7536966-7537052,7537718-7537786,
7537859-7538188,7539777-7539824,7540003-7540069,
7540150-7540208,7541220-7541453,7541536-7541601,
7541684-7541883,7542104-7542197,7542295-7542414,
7542596-7542703,7542808-7542871,7543378-7543409,
7546049-7548007
Length = 1407
Score = 42.3 bits (95), Expect = 9e-05
Identities = 22/56 (39%), Positives = 33/56 (58%), Gaps = 7/56 (12%)
Frame = +1
Query: 85 ITEEEYEVEKIID------SKKIKGKLHYLIRWKGYSAGNDTWEP-EITLSCPDLI 231
+ EE+EV K++D +K K L++ +RWKGY +DTWEP E +C + I
Sbjct: 930 VPPEEFEVWKLVDICFGDPNKVSKHGLYFKVRWKGYGPHHDTWEPVEGLRNCKEAI 985
>03_02_0234 +
6625417-6626184,6626314-6626339,6626435-6626531,
6627009-6627116,6627194-6627328,6627429-6627528,
6627763-6627974,6628060-6628125,6628231-6628464,
6628583-6628641,6628716-6628782,6628863-6629192,
6629267-6629335,6629417-6629503,6629605-6629692,
6630057-6630178,6630251-6630355,6630442-6630485,
6630558-6630627,6630711-6630814,6630980-6631189,
6632935-6633018,6633291-6634003,6634115-6634649,
6634703-6634789,6634826-6634970,6635049-6635125,
6635215-6635359,6635462-6635626,6635725-6635958
Length = 1761
Score = 39.5 bits (88), Expect = 7e-04
Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 7/59 (11%)
Frame = +1
Query: 76 DKKITEEEYEVEKIID------SKKIKGKLHYLIRWKGYSAGNDTWEPEITLS-CPDLI 231
++ + E+ ++VE++++ S K L + +RWKGY DTWEP LS CP+ I
Sbjct: 550 NEPLPEDIFDVEELLEICYGDPSNTGKNGLWFKVRWKGYDPSYDTWEPIDGLSDCPERI 608
>10_01_0028 -
359988-359996,360228-360332,360415-360536,360676-360763,
360988-361056,361132-361461,361544-361610,361695-361753,
361838-362056,362224-362289,362370-362500,362683-362782,
362864-363001,363111-363218,363627-363723,363806-364257
Length = 719
Score = 38.3 bits (85), Expect = 0.002
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 6/63 (9%)
Frame = +1
Query: 52 AKKRKSGKDKKITEEEYEVEKIID-----SKKIKGKLHYLIRWKGYSAGNDTWEP-EITL 213
A + + D+ + ++E+ VEK+ S + G L++ ++WKGY DTWEP E
Sbjct: 399 ASENEEDDDEPLEKDEFVVEKLAGICYGGSGREDG-LYFKVQWKGYGREEDTWEPIENLR 457
Query: 214 SCP 222
CP
Sbjct: 458 DCP 460
>10_05_0046 +
8516043-8516425,8517908-8518019,8518276-8518377,
8518605-8518657,8518976-8519062,8519162-8519830,
8520154-8520214,8520295-8520342
Length = 504
Score = 34.3 bits (75), Expect = 0.025
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = +1
Query: 70 GKDKKITEEEYEVEKIIDSKKIKGKLHYLIRWKGYSAGN--DTWEPEIT 210
G K+ E YE+E I + KGKL YL++W G D PE++
Sbjct: 97 GSPPKLAEGYYEIEDIRRRRLRKGKLQYLVKWGSQWEGGAWDLAAPELS 145
>12_01_0286 -
2127622-2127897,2128611-2128997,2129195-2129550,
2129923-2130046,2130128-2130196,2131190-2131238,
2132222-2132336,2132854-2132903,2133000-2133137,
2134182-2134228
Length = 536
Score = 28.7 bits (61), Expect = 1.2
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +1
Query: 55 KKRKSGKDKKITEEEYEVEKIIDSKK 132
K RK KD+K+T + +++ KI+ KK
Sbjct: 487 KTRKQNKDQKLTNDLHKINKILARKK 512
>11_01_0283 -
2095291-2095566,2095962-2096348,2096523-2096881,
2097275-2097398,2097480-2097548,2098536-2098584,
2099185-2099299,2099823-2099872,2099969-2100106,
2101136-2101197,2102066-2102180,2103433-2103664,
2103748-2103826,2103925-2103993,2104079-2104171,
2104577-2104622,2105223-2105268,2105354-2105411,
2105577-2105615,2105712-2105783,2105930-2106021,
2106824-2106923
Length = 889
Score = 28.7 bits (61), Expect = 1.2
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +1
Query: 55 KKRKSGKDKKITEEEYEVEKIIDSKK 132
K RK KD+K+T + +++ KI+ KK
Sbjct: 840 KTRKQNKDQKLTNDLHKINKILARKK 865
>02_05_1082 - 33976038-33978035
Length = 665
Score = 27.5 bits (58), Expect = 2.8
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Frame = +1
Query: 79 KKITEEEYEVEKIIDSK---KIKGKLHYLIRWKGYSAG 183
KK +E Y+V I+D+ + K Y +RW GY G
Sbjct: 123 KKRIDEMYQVNLILDNLPAIRYTKKDDYFLRWTGYPVG 160
>06_01_0584 -
4178391-4178732,4178854-4178915,4180361-4180481,
4180592-4180732,4180830-4180959,4182306-4182436,
4182528-4182601,4182680-4182741,4183135-4183209,
4184658-4184760,4184835-4184991,4185549-4185743,
4186204-4186282,4186697-4186806,4187249-4187374,
4187475-4187541,4187622-4187791,4187880-4188018,
4188361-4188522,4188672-4188772,4188852-4188994,
4189438-4189537,4190364-4190414,4191062-4191169,
4191279-4191494,4191585-4191721,4191820-4191915,
4192017-4192234,4192764-4192925,4193006-4193163,
4194221-4194379
Length = 1364
Score = 26.2 bits (55), Expect = 6.6
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = +1
Query: 64 KSGKDKKITEEEYE-VEKIIDSKKIK-GKLHYLIRWKGYSAGNDTWE 198
KS D E+ V++I+ ++K G+ Y ++WK + TWE
Sbjct: 138 KSDDDYSAIRPEWTTVDRILATRKSSTGEREYYVKWKELTYDECTWE 184
Score = 25.8 bits (54), Expect = 8.7
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = +1
Query: 124 SKKIKGKLHYLIRWKGYSAGNDTWEPE 204
SKK K YLI+WKG S + TW E
Sbjct: 84 SKK-KPVKRYLIKWKGISHLHCTWVSE 109
>12_02_0652 -
21527768-21528328,21528980-21529738,21530151-21530216,
21530550-21530598,21530717-21530817,21531469-21531540,
21531630-21531746,21531870-21531959,21532224-21532319,
21532429-21532482,21533210-21533290,21533382-21533581,
21533677-21533804,21533943-21533995,21534312-21534374
Length = 829
Score = 25.8 bits (54), Expect = 8.7
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = +1
Query: 85 ITEEEYEVEKIIDSKKIKGKLHYLIRWKGYSAG 183
+T + E++KI+ + + K+ +IR +GYS G
Sbjct: 188 LTRDAEEIQKIVVFEGVFEKIFSIIREEGYSDG 220
>02_04_0518 + 23601355-23602498,23603481-23603779
Length = 480
Score = 25.8 bits (54), Expect = 8.7
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +1
Query: 52 AKKRKSGKDKKITEEEYEVEK 114
A+KRK G+ ++ T+ E EVE+
Sbjct: 2 ARKRKRGRTRRATQAEAEVEQ 22
>01_06_1556 -
38222071-38222708,38222795-38222822,38222950-38223070,
38223206-38223318,38223424-38223506,38223868-38223930,
38224100-38224254,38224411-38224580,38225101-38225189,
38225304-38225496,38225655-38225779,38226069-38226475,
38226855-38226919,38227414-38227692,38227772-38227845,
38228241-38228292,38228366-38228473,38228871-38228972,
38229100-38229173,38229262-38229435,38229667-38229771,
38229867-38229977,38230364-38230487
Length = 1150
Score = 25.8 bits (54), Expect = 8.7
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +1
Query: 151 YLIRWKGYSAGNDTWEP 201
+L++WKG TWEP
Sbjct: 474 FLVKWKGLDYCEATWEP 490
>01_01_0365 -
2859617-2859722,2860047-2860489,2862232-2862391,
2863431-2863516,2863648-2866272
Length = 1139
Score = 25.8 bits (54), Expect = 8.7
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +1
Query: 73 KDKKITEEEYEVEKIIDSKKIKGKLHYLIRWKGY 174
KDKK+ E +K+IDS I ++ + + +GY
Sbjct: 490 KDKKMDEAARLFDKMIDSNVIPNEVTFNVMIEGY 523
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.309 0.131 0.388
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,343,735
Number of Sequences: 37544
Number of extensions: 72376
Number of successful extensions: 229
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 223
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 470052804
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)
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