Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_O21
(339 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41992-6|AAA83357.1| 270|Caenorhabditis elegans Hypothetical pr... 46 9e-06
L13200-3|AAA28192.1| 304|Caenorhabditis elegans C.elegans chrom... 46 9e-06
Z36753-7|CAA85339.1| 339|Caenorhabditis elegans Hypothetical pr... 44 3e-05
Z92803-4|CAB54267.2| 303|Caenorhabditis elegans Hypothetical pr... 44 4e-05
Z92803-3|CAB07243.2| 301|Caenorhabditis elegans Hypothetical pr... 44 4e-05
Z92803-2|CAB07241.1| 175|Caenorhabditis elegans Hypothetical pr... 44 4e-05
AF123574-1|AAD21197.1| 175|Caenorhabditis elegans chromo-domain... 44 4e-05
AF123573-1|AAD21196.1| 301|Caenorhabditis elegans chromo-domain... 44 4e-05
Z70210-6|CAA94152.1| 184|Caenorhabditis elegans Hypothetical pr... 40 6e-04
AF056580-1|AAC78602.1| 184|Caenorhabditis elegans heterochromat... 40 6e-04
U61944-4|AAB03120.1| 891|Caenorhabditis elegans Hypothetical pr... 36 0.010
Z81035-4|CAB02737.1| 503|Caenorhabditis elegans Hypothetical pr... 33 0.040
Z93398-7|CAD90188.2| 4955|Caenorhabditis elegans Hypothetical pr... 29 0.85
Z93398-6|CAD90187.2| 4944|Caenorhabditis elegans Hypothetical pr... 29 0.85
Z93398-4|CAH04743.1| 4410|Caenorhabditis elegans Hypothetical pr... 29 0.85
Z92788-7|CAD90177.2| 4955|Caenorhabditis elegans Hypothetical pr... 29 0.85
Z92788-6|CAD90176.2| 4944|Caenorhabditis elegans Hypothetical pr... 29 0.85
Z92788-4|CAH04711.1| 4410|Caenorhabditis elegans Hypothetical pr... 29 0.85
AL031637-4|CAD90184.2| 4955|Caenorhabditis elegans Hypothetical ... 29 0.85
AL031637-3|CAD90183.2| 4944|Caenorhabditis elegans Hypothetical ... 29 0.85
AL031637-2|CAH04759.1| 4410|Caenorhabditis elegans Hypothetical ... 29 0.85
AJ505905-1|CAD44516.1| 3522|Caenorhabditis elegans VAB-10B prote... 29 0.85
AJ505816-1|CAD44324.1| 4944|Caenorhabditis elegans VAB-10B prote... 29 0.85
U23169-4|AAC46697.1| 706|Caenorhabditis elegans Hypothetical pr... 29 1.1
U55373-1|AAC25894.1| 1829|Caenorhabditis elegans Lethal protein ... 28 2.0
AF308445-1|AAG29838.1| 1829|Caenorhabditis elegans LET-418 protein. 28 2.0
AC025726-23|AAK73934.1| 763|Caenorhabditis elegans Hypothetical... 28 2.0
U41013-2|AAA82300.1| 557|Caenorhabditis elegans Hypothetical pr... 27 2.6
Z67884-5|CAA91810.1| 1787|Caenorhabditis elegans Hypothetical pr... 27 3.4
Z67881-4|CAA91798.1| 1787|Caenorhabditis elegans Hypothetical pr... 27 3.4
AF308444-1|AAG29837.1| 1787|Caenorhabditis elegans CHD-3 protein. 27 3.4
Z92970-2|CAB07481.2| 1461|Caenorhabditis elegans Hypothetical pr... 27 4.5
Z68161-7|CAD36488.1| 1130|Caenorhabditis elegans Hypothetical pr... 26 6.0
AF016449-11|AAG23992.1| 353|Caenorhabditis elegans Serpentine r... 26 7.9
>U41992-6|AAA83357.1| 270|Caenorhabditis elegans Hypothetical
protein F32E10.2 protein.
Length = 270
Score = 45.6 bits (103), Expect = 9e-06
Identities = 21/61 (34%), Positives = 36/61 (59%), Gaps = 3/61 (4%)
Frame = +1
Query: 58 KRKSGKDKKITEEEYEVEKIIDSKKIKGKLHYLIRWKGYSA---GNDTWEPEITLSCPDL 228
K+K K + EY VE+++ +K+KG YL++WKGY ++ WE ++ +C DL
Sbjct: 73 KKKVTKQSDDSSGEYAVERVLAHRKVKGSPLYLVQWKGYPHPVWNSEMWEEDLD-NCKDL 131
Query: 229 I 231
+
Sbjct: 132 L 132
>L13200-3|AAA28192.1| 304|Caenorhabditis elegans C.elegans
chromodomain proteinprotein 1 protein.
Length = 304
Score = 45.6 bits (103), Expect = 9e-06
Identities = 19/46 (41%), Positives = 29/46 (63%)
Frame = +1
Query: 94 EEYEVEKIIDSKKIKGKLHYLIRWKGYSAGNDTWEPEITLSCPDLI 231
E Y VE I++ +K KGK + I+W GY +++WEP+ + P LI
Sbjct: 6 ELYTVESILEHRKKKGKSEFYIKWLGYDHTHNSWEPKENIVDPTLI 51
>Z36753-7|CAA85339.1| 339|Caenorhabditis elegans Hypothetical
protein T09A5.8 protein.
Length = 339
Score = 44.0 bits (99), Expect = 3e-05
Identities = 19/39 (48%), Positives = 24/39 (61%)
Frame = +1
Query: 88 TEEEYEVEKIIDSKKIKGKLHYLIRWKGYSAGNDTWEPE 204
++E +EVEKI+ K L +RW GY A DTWEPE
Sbjct: 20 SDEIFEVEKILAHKVTDNLLVLQVRWLGYGADEDTWEPE 58
>Z92803-4|CAB54267.2| 303|Caenorhabditis elegans Hypothetical
protein K01G5.2c protein.
Length = 303
Score = 43.6 bits (98), Expect = 4e-05
Identities = 18/61 (29%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Frame = +1
Query: 52 AKKRKSGKDKKITEEEYEVEKIIDSKKIK-GKLHYLIRWKGYSAGNDTWEPEITLSCPDL 228
+K K K + + + VEK++D + K G+ +LI+W+G+ + +WEP L C ++
Sbjct: 3 SKSTKRAKIEDPKDNVFMVEKVLDKRTGKAGRDEFLIQWQGFPESDSSWEPRENLQCVEM 62
Query: 229 I 231
+
Sbjct: 63 L 63
>Z92803-3|CAB07243.2| 301|Caenorhabditis elegans Hypothetical
protein K01G5.2b protein.
Length = 301
Score = 43.6 bits (98), Expect = 4e-05
Identities = 18/61 (29%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Frame = +1
Query: 52 AKKRKSGKDKKITEEEYEVEKIIDSKKIK-GKLHYLIRWKGYSAGNDTWEPEITLSCPDL 228
+K K K + + + VEK++D + K G+ +LI+W+G+ + +WEP L C ++
Sbjct: 3 SKSTKRAKIEDPKDNVFMVEKVLDKRTGKAGRDEFLIQWQGFPESDSSWEPRENLQCVEM 62
Query: 229 I 231
+
Sbjct: 63 L 63
>Z92803-2|CAB07241.1| 175|Caenorhabditis elegans Hypothetical
protein K01G5.2a protein.
Length = 175
Score = 43.6 bits (98), Expect = 4e-05
Identities = 18/61 (29%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Frame = +1
Query: 52 AKKRKSGKDKKITEEEYEVEKIIDSKKIK-GKLHYLIRWKGYSAGNDTWEPEITLSCPDL 228
+K K K + + + VEK++D + K G+ +LI+W+G+ + +WEP L C ++
Sbjct: 3 SKSTKRAKIEDPKDNVFMVEKVLDKRTGKAGRDEFLIQWQGFPESDSSWEPRENLQCVEM 62
Query: 229 I 231
+
Sbjct: 63 L 63
>AF123574-1|AAD21197.1| 175|Caenorhabditis elegans chromo-domain
protein protein.
Length = 175
Score = 43.6 bits (98), Expect = 4e-05
Identities = 18/61 (29%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Frame = +1
Query: 52 AKKRKSGKDKKITEEEYEVEKIIDSKKIK-GKLHYLIRWKGYSAGNDTWEPEITLSCPDL 228
+K K K + + + VEK++D + K G+ +LI+W+G+ + +WEP L C ++
Sbjct: 3 SKSTKRAKIEDPKDNVFMVEKVLDKRTGKAGRDEFLIQWQGFPESDSSWEPRENLQCVEM 62
Query: 229 I 231
+
Sbjct: 63 L 63
>AF123573-1|AAD21196.1| 301|Caenorhabditis elegans chromo-domain
protein protein.
Length = 301
Score = 43.6 bits (98), Expect = 4e-05
Identities = 18/61 (29%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Frame = +1
Query: 52 AKKRKSGKDKKITEEEYEVEKIIDSKKIK-GKLHYLIRWKGYSAGNDTWEPEITLSCPDL 228
+K K K + + + VEK++D + K G+ +LI+W+G+ + +WEP L C ++
Sbjct: 3 SKSTKRAKIEDPKDNVFMVEKVLDKRTGKAGRDEFLIQWQGFPESDSSWEPRENLQCVEM 62
Query: 229 I 231
+
Sbjct: 63 L 63
>Z70210-6|CAA94152.1| 184|Caenorhabditis elegans Hypothetical
protein K08H2.6 protein.
Length = 184
Score = 39.5 bits (88), Expect = 6e-04
Identities = 17/64 (26%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Frame = +1
Query: 52 AKKRKSGKDKKITEEE----YEVEKIIDSKKIKGKLHYLIRWKGYSAGNDTWEPEITLSC 219
A++ + +D + +E + VEK+++ + +G Y I+W+G+ +WEP L C
Sbjct: 17 AREAQQAQDAPLFQESSSNVFVVEKVLNKRLTRGGSEYYIKWQGFPESECSWEPIENLQC 76
Query: 220 PDLI 231
+I
Sbjct: 77 DRMI 80
>AF056580-1|AAC78602.1| 184|Caenorhabditis elegans heterochromatin
protein 1 homolog protein.
Length = 184
Score = 39.5 bits (88), Expect = 6e-04
Identities = 17/64 (26%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Frame = +1
Query: 52 AKKRKSGKDKKITEEE----YEVEKIIDSKKIKGKLHYLIRWKGYSAGNDTWEPEITLSC 219
A++ + +D + +E + VEK+++ + +G Y I+W+G+ +WEP L C
Sbjct: 17 AREAQQAQDAPLFQESSSNVFVVEKVLNKRLTRGGSEYYIKWQGFPESECSWEPIENLQC 76
Query: 220 PDLI 231
+I
Sbjct: 77 DRMI 80
>U61944-4|AAB03120.1| 891|Caenorhabditis elegans Hypothetical
protein T12E12.2 protein.
Length = 891
Score = 35.5 bits (78), Expect = 0.010
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +1
Query: 91 EEEYEVEKIIDSKKIKGKLHYLIRWKGYSAGNDTWEPEITL-SCPDL 228
E ++ + K+ K YL+ W+GY TWEPE L +C +L
Sbjct: 31 EAKFSPASVEYDKRRHSKYAYLVHWRGYDWKERTWEPEENLENCEEL 77
>Z81035-4|CAB02737.1| 503|Caenorhabditis elegans Hypothetical
protein C15H11.5 protein.
Length = 503
Score = 33.5 bits (73), Expect = 0.040
Identities = 16/48 (33%), Positives = 27/48 (56%)
Frame = +1
Query: 82 KITEEEYEVEKIIDSKKIKGKLHYLIRWKGYSAGNDTWEPEITLSCPD 225
K+ E YEV+ I+ S+ ++ Y ++W ++ G DT E E L C +
Sbjct: 39 KVDTEFYEVQDIVRSRIEGREIQYTVKWTNWN-GGDTEEAERRLVCTE 85
>Z93398-7|CAD90188.2| 4955|Caenorhabditis elegans Hypothetical protein
ZK1151.1c protein.
Length = 4955
Score = 29.1 bits (62), Expect = 0.85
Identities = 15/38 (39%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Frame = +1
Query: 52 AKKRKSGKDKKITEEEYEVEKI-IDSKKIKGKLHYLIR 162
A KR + ++KKITE E E++K+ D+ +I G L + +
Sbjct: 2758 AGKRLAQREKKITETEDEIDKLHADADQIVGALEAIAK 2795
>Z93398-6|CAD90187.2| 4944|Caenorhabditis elegans Hypothetical protein
ZK1151.1b protein.
Length = 4944
Score = 29.1 bits (62), Expect = 0.85
Identities = 15/38 (39%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Frame = +1
Query: 52 AKKRKSGKDKKITEEEYEVEKI-IDSKKIKGKLHYLIR 162
A KR + ++KKITE E E++K+ D+ +I G L + +
Sbjct: 2758 AGKRLAQREKKITETEDEIDKLHADADQIVGALEAIAK 2795
>Z93398-4|CAH04743.1| 4410|Caenorhabditis elegans Hypothetical protein
ZK1151.1g protein.
Length = 4410
Score = 29.1 bits (62), Expect = 0.85
Identities = 15/38 (39%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Frame = +1
Query: 52 AKKRKSGKDKKITEEEYEVEKI-IDSKKIKGKLHYLIR 162
A KR + ++KKITE E E++K+ D+ +I G L + +
Sbjct: 2213 AGKRLAQREKKITETEDEIDKLHADADQIVGALEAIAK 2250
>Z92788-7|CAD90177.2| 4955|Caenorhabditis elegans Hypothetical protein
ZK1151.1c protein.
Length = 4955
Score = 29.1 bits (62), Expect = 0.85
Identities = 15/38 (39%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Frame = +1
Query: 52 AKKRKSGKDKKITEEEYEVEKI-IDSKKIKGKLHYLIR 162
A KR + ++KKITE E E++K+ D+ +I G L + +
Sbjct: 2758 AGKRLAQREKKITETEDEIDKLHADADQIVGALEAIAK 2795
>Z92788-6|CAD90176.2| 4944|Caenorhabditis elegans Hypothetical protein
ZK1151.1b protein.
Length = 4944
Score = 29.1 bits (62), Expect = 0.85
Identities = 15/38 (39%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Frame = +1
Query: 52 AKKRKSGKDKKITEEEYEVEKI-IDSKKIKGKLHYLIR 162
A KR + ++KKITE E E++K+ D+ +I G L + +
Sbjct: 2758 AGKRLAQREKKITETEDEIDKLHADADQIVGALEAIAK 2795
>Z92788-4|CAH04711.1| 4410|Caenorhabditis elegans Hypothetical protein
ZK1151.1g protein.
Length = 4410
Score = 29.1 bits (62), Expect = 0.85
Identities = 15/38 (39%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Frame = +1
Query: 52 AKKRKSGKDKKITEEEYEVEKI-IDSKKIKGKLHYLIR 162
A KR + ++KKITE E E++K+ D+ +I G L + +
Sbjct: 2213 AGKRLAQREKKITETEDEIDKLHADADQIVGALEAIAK 2250
>AL031637-4|CAD90184.2| 4955|Caenorhabditis elegans Hypothetical
protein ZK1151.1c protein.
Length = 4955
Score = 29.1 bits (62), Expect = 0.85
Identities = 15/38 (39%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Frame = +1
Query: 52 AKKRKSGKDKKITEEEYEVEKI-IDSKKIKGKLHYLIR 162
A KR + ++KKITE E E++K+ D+ +I G L + +
Sbjct: 2758 AGKRLAQREKKITETEDEIDKLHADADQIVGALEAIAK 2795
>AL031637-3|CAD90183.2| 4944|Caenorhabditis elegans Hypothetical
protein ZK1151.1b protein.
Length = 4944
Score = 29.1 bits (62), Expect = 0.85
Identities = 15/38 (39%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Frame = +1
Query: 52 AKKRKSGKDKKITEEEYEVEKI-IDSKKIKGKLHYLIR 162
A KR + ++KKITE E E++K+ D+ +I G L + +
Sbjct: 2758 AGKRLAQREKKITETEDEIDKLHADADQIVGALEAIAK 2795
>AL031637-2|CAH04759.1| 4410|Caenorhabditis elegans Hypothetical
protein ZK1151.1g protein.
Length = 4410
Score = 29.1 bits (62), Expect = 0.85
Identities = 15/38 (39%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Frame = +1
Query: 52 AKKRKSGKDKKITEEEYEVEKI-IDSKKIKGKLHYLIR 162
A KR + ++KKITE E E++K+ D+ +I G L + +
Sbjct: 2213 AGKRLAQREKKITETEDEIDKLHADADQIVGALEAIAK 2250
>AJ505905-1|CAD44516.1| 3522|Caenorhabditis elegans VAB-10B protein
protein.
Length = 3522
Score = 29.1 bits (62), Expect = 0.85
Identities = 15/38 (39%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Frame = +1
Query: 52 AKKRKSGKDKKITEEEYEVEKI-IDSKKIKGKLHYLIR 162
A KR + ++KKITE E E++K+ D+ +I G L + +
Sbjct: 2758 AGKRLAQREKKITETEDEIDKLHADADQIVGALEAIAK 2795
>AJ505816-1|CAD44324.1| 4944|Caenorhabditis elegans VAB-10B protein
protein.
Length = 4944
Score = 29.1 bits (62), Expect = 0.85
Identities = 15/38 (39%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Frame = +1
Query: 52 AKKRKSGKDKKITEEEYEVEKI-IDSKKIKGKLHYLIR 162
A KR + ++KKITE E E++K+ D+ +I G L + +
Sbjct: 2758 AGKRLAQREKKITETEDEIDKLHADADQIVGALEAIAK 2795
>U23169-4|AAC46697.1| 706|Caenorhabditis elegans Hypothetical
protein C29H12.5 protein.
Length = 706
Score = 28.7 bits (61), Expect = 1.1
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +1
Query: 151 YLIRWKGYSAGNDTWEPEITLSCPDLI 231
+L++W GY TWEPE + PD +
Sbjct: 95 FLVKWLGYGNKEMTWEPESNI--PDSV 119
>U55373-1|AAC25894.1| 1829|Caenorhabditis elegans Lethal protein 418
protein.
Length = 1829
Score = 27.9 bits (59), Expect = 2.0
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +1
Query: 85 ITEEEYEVEKIIDSKKI-KGKLHYLIRWKGYSAGNDTWE 198
I E ++ +II+ + K + YL++WK S TWE
Sbjct: 484 IKPEWMQIHRIINHQSYAKSQQDYLVKWKELSYDQATWE 522
>AF308445-1|AAG29838.1| 1829|Caenorhabditis elegans LET-418 protein.
Length = 1829
Score = 27.9 bits (59), Expect = 2.0
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +1
Query: 85 ITEEEYEVEKIIDSKKI-KGKLHYLIRWKGYSAGNDTWE 198
I E ++ +II+ + K + YL++WK S TWE
Sbjct: 484 IKPEWMQIHRIINHQSYAKSQQDYLVKWKELSYDQATWE 522
>AC025726-23|AAK73934.1| 763|Caenorhabditis elegans Hypothetical
protein Y71G12B.8 protein.
Length = 763
Score = 27.9 bits (59), Expect = 2.0
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +1
Query: 55 KKRKSGKDKKITEEEYEVEKIIDSKKI 135
+KRKSGK KK E E +ID K +
Sbjct: 116 EKRKSGKSKKSQENEDFFSALIDGKSL 142
>U41013-2|AAA82300.1| 557|Caenorhabditis elegans Hypothetical
protein T06C10.3 protein.
Length = 557
Score = 27.5 bits (58), Expect = 2.6
Identities = 12/30 (40%), Positives = 22/30 (73%)
Frame = +1
Query: 58 KRKSGKDKKITEEEYEVEKIIDSKKIKGKL 147
K++ DKK EE+ E+EK +++ K++GK+
Sbjct: 54 KQEKEDDKKEVEEKKEIEKSVEA-KVEGKV 82
>Z67884-5|CAA91810.1| 1787|Caenorhabditis elegans Hypothetical
protein T14G8.1 protein.
Length = 1787
Score = 27.1 bits (57), Expect = 3.4
Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +1
Query: 85 ITEEEYEVEKIIDSKKI-KGKLHYLIRWKGYSAGNDTWEPEIT 210
+ E ++ +II+ K + YL++WK S + TWE + T
Sbjct: 496 VKPEWMQIHRIINHLSYAKSQQDYLVKWKELSYEHATWERDDT 538
>Z67881-4|CAA91798.1| 1787|Caenorhabditis elegans Hypothetical
protein T14G8.1 protein.
Length = 1787
Score = 27.1 bits (57), Expect = 3.4
Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +1
Query: 85 ITEEEYEVEKIIDSKKI-KGKLHYLIRWKGYSAGNDTWEPEIT 210
+ E ++ +II+ K + YL++WK S + TWE + T
Sbjct: 496 VKPEWMQIHRIINHLSYAKSQQDYLVKWKELSYEHATWERDDT 538
>AF308444-1|AAG29837.1| 1787|Caenorhabditis elegans CHD-3 protein.
Length = 1787
Score = 27.1 bits (57), Expect = 3.4
Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +1
Query: 85 ITEEEYEVEKIIDSKKI-KGKLHYLIRWKGYSAGNDTWEPEIT 210
+ E ++ +II+ K + YL++WK S + TWE + T
Sbjct: 496 VKPEWMQIHRIINHLSYAKSQQDYLVKWKELSYEHATWERDDT 538
>Z92970-2|CAB07481.2| 1461|Caenorhabditis elegans Hypothetical
protein H06O01.2 protein.
Length = 1461
Score = 26.6 bits (56), Expect = 4.5
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = +1
Query: 136 KGKLHYLIRWKGYSAGNDTWEPEITLS 216
K + + ++W G+S ++TWE E +L+
Sbjct: 234 KTEQQFFVKWTGWSHLHNTWESENSLA 260
Score = 25.8 bits (54), Expect = 7.9
Identities = 13/49 (26%), Positives = 25/49 (51%), Gaps = 7/49 (14%)
Frame = +1
Query: 79 KKITEEEYEVEKIIDSKKIKGKL-------HYLIRWKGYSAGNDTWEPE 204
+++ EE +VE+++ + + + YLI+W G + TWE E
Sbjct: 303 EELCEEYKKVERVVAHQTSRDRAADGSMATEYLIKWSGLPYSDCTWEDE 351
>Z68161-7|CAD36488.1| 1130|Caenorhabditis elegans Hypothetical protein
F20C5.2b protein.
Length = 1130
Score = 26.2 bits (55), Expect = 6.0
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = -1
Query: 117 YFFHLILFLRYFFIFAGFTFLSI 49
YF+ LI FL F IF TFL I
Sbjct: 1107 YFYLLIAFLFRFLIFLSDTFLPI 1129
>AF016449-11|AAG23992.1| 353|Caenorhabditis elegans Serpentine
receptor, class t protein7 protein.
Length = 353
Score = 25.8 bits (54), Expect = 7.9
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = -3
Query: 280 VFFLCFLNFLSLHCTC*LNLDMTM*SQVPMCHCLQNILSNGLNNVISL*F 131
++FLCFL L L+ + M S V M N ++ GL ++I + F
Sbjct: 51 LYFLCFLAILKLNLRVPVYQLMLFLSIVDMLQLSCNSIATGLFHIIGISF 100
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.309 0.131 0.388
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,875,082
Number of Sequences: 27780
Number of extensions: 73269
Number of successful extensions: 317
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 297
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 316
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 429601520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)
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