Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_O19
         (295 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...    90   5e-20
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|...    57   5e-10
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...    44   6e-06
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...    42   2e-05
SPBC19G7.16 |iws1||transcription elongation factor complex subun...    25   1.8  
SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact...    24   4.0  
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei...    24   5.3  
SPAC16E8.17c |||succinate-CoA ligase alpha subunit|Schizosacchar...    23   7.1  
SPAC7D4.06c |alg3||dolichol-P-Man dependent alpha|Schizosaccharo...    23   9.3  

>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score = 90.2 bits (214), Expect = 5e-20
 Identities = 36/55 (65%), Positives = 46/55 (83%)
 Frame = +2

Query: 122 MREIVHLQAGQCGNQIGAKFWEIIFEEHGIDPTGVYRGTSDLQLERISVYYNEAS 286
           MREIVH+QAGQCGNQ+GA FW  I +EHG+D  G+Y GTS+ Q ER++VY+NEA+
Sbjct: 1   MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIYHGTSEAQHERLNVYFNEAA 55


>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 446

 Score = 57.2 bits (132), Expect = 5e-10
 Identities = 24/53 (45%), Positives = 36/53 (67%)
 Frame = +2

Query: 125 REIVHLQAGQCGNQIGAKFWEIIFEEHGIDPTGVYRGTSDLQLERISVYYNEA 283
           REI+ LQAGQCGNQIG++FW+ +  EHGI P G     +   ++R  V++ ++
Sbjct: 3   REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFATEGVDRKDVFFYQS 55


>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score = 43.6 bits (98), Expect = 6e-06
 Identities = 18/34 (52%), Positives = 21/34 (61%)
 Frame = +2

Query: 122 MREIVHLQAGQCGNQIGAKFWEIIFEEHGIDPTG 223
           MREI+ +  GQ G QIG   WE+   EHGI P G
Sbjct: 1   MREIISIHVGQAGTQIGNACWELYCLEHGIQPNG 34


>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score = 41.9 bits (94), Expect = 2e-05
 Identities = 20/53 (37%), Positives = 30/53 (56%)
 Frame = +2

Query: 122 MREIVHLQAGQCGNQIGAKFWEIIFEEHGIDPTGVYRGTSDLQLERISVYYNE 280
           MRE++ +  GQ G QIG   WE+   EHGI P G    T + ++ + + Y N+
Sbjct: 1   MREVISVHVGQAGVQIGNACWELYCLEHGIGPDGF--PTENSEVHKNNSYLND 51


>SPBC19G7.16 |iws1||transcription elongation factor complex subunit
           Iws1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 428

 Score = 25.4 bits (53), Expect = 1.8
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = +2

Query: 161 NQIGAKFWEIIFEEHGIDPTGVYRGTSDLQLERI 262
           N++G    E++ E+  +DPT   +   DLQ++ +
Sbjct: 133 NELGENEEEVLTEQKQLDPTLAAKKELDLQMDAV 166


>SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor
           complex associated protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 710

 Score = 24.2 bits (50), Expect = 4.0
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -1

Query: 166 LVTALPGLEVHYFPH 122
           L++A PGLE H F H
Sbjct: 51  LMSAFPGLEPHVFQH 65


>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1462

 Score = 23.8 bits (49), Expect = 5.3
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -1

Query: 190 YLPELCTNLVTALPGL 143
           YLPEL + L T LPG+
Sbjct: 315 YLPELLSVLKTLLPGI 330


>SPAC16E8.17c |||succinate-CoA ligase alpha
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 331

 Score = 23.4 bits (48), Expect = 7.1
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -3

Query: 257 SRVVNRLCPGKRR*GRCRALRILSPRTLHQSG 162
           SR+V   CPG  R G+C+ + I+ P  +H+ G
Sbjct: 150 SRLVGPNCPGIIRPGQCK-IGIM-PSHIHKPG 179


>SPAC7D4.06c |alg3||dolichol-P-Man dependent
           alpha|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 406

 Score = 23.0 bits (47), Expect = 9.3
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -2

Query: 261 ILSSCKSLVPR*TPVGSMPCSSNIISQNFAPIWL 160
           ILSSCK    R + + S+ CS  + S  + P +L
Sbjct: 165 ILSSCKKKWVRASILLSVACSVKMSSLLYVPAYL 198


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 981,595
Number of Sequences: 5004
Number of extensions: 15167
Number of successful extensions: 33
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 71828050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)