Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_O17
(290 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 99 2e-22
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 99 2e-22
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 99 2e-22
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 60 5e-11
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 46 1e-06
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 35 0.003
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 34 0.004
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 34 0.004
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 29 0.10
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 29 0.18
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 26 0.97
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce... 26 1.3
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su... 25 2.2
SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal |Schizos... 25 3.0
SPAC2G11.11c |prh1||ATP-dependent RNA helicase Prh1|Schizosaccha... 24 3.9
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|... 24 5.2
SPBC2F12.10 |||mitochondrial ribosomal protein subunit L35|Schiz... 24 5.2
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 24 5.2
SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit... 23 6.9
SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase... 23 6.9
SPBC19G7.10c |||topoisomerase associated protein |Schizosaccharo... 23 6.9
SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr 1||... 23 6.9
SPAC17G8.04c |arc15|arc5, arc5|ARP2/3 actin-organizing complex s... 23 9.1
SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy... 23 9.1
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 98.7 bits (235), Expect = 2e-22
Identities = 44/49 (89%), Positives = 47/49 (95%)
Frame = +3
Query: 63 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDERTIEKFEKEAQEM 209
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGID+RTIEKFEKEA E+
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATEL 49
Score = 58.8 bits (136), Expect = 1e-10
Identities = 26/32 (81%), Positives = 29/32 (90%)
Frame = +1
Query: 193 RKPRKCGKGSFKYAWVLDKLKAERERGITIDI 288
++ + GKGSFKYAWVLDKLKAERERGITIDI
Sbjct: 44 KEATELGKGSFKYAWVLDKLKAERERGITIDI 75
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 98.7 bits (235), Expect = 2e-22
Identities = 44/49 (89%), Positives = 47/49 (95%)
Frame = +3
Query: 63 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDERTIEKFEKEAQEM 209
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGID+RTIEKFEKEA E+
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATEL 49
Score = 58.8 bits (136), Expect = 1e-10
Identities = 26/32 (81%), Positives = 29/32 (90%)
Frame = +1
Query: 193 RKPRKCGKGSFKYAWVLDKLKAERERGITIDI 288
++ + GKGSFKYAWVLDKLKAERERGITIDI
Sbjct: 44 KEATELGKGSFKYAWVLDKLKAERERGITIDI 75
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 98.7 bits (235), Expect = 2e-22
Identities = 44/49 (89%), Positives = 47/49 (95%)
Frame = +3
Query: 63 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDERTIEKFEKEAQEM 209
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGID+RTIEKFEKEA E+
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATEL 49
Score = 58.8 bits (136), Expect = 1e-10
Identities = 26/32 (81%), Positives = 29/32 (90%)
Frame = +1
Query: 193 RKPRKCGKGSFKYAWVLDKLKAERERGITIDI 288
++ + GKGSFKYAWVLDKLKAERERGITIDI
Sbjct: 44 KEATELGKGSFKYAWVLDKLKAERERGITIDI 75
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 60.5 bits (140), Expect = 5e-11
Identities = 25/44 (56%), Positives = 36/44 (81%)
Frame = +3
Query: 75 KVHINIVVIGHVDSGKSTTTGHLIYKCGGIDERTIEKFEKEAQE 206
K H+NIV IGHVD+GKST G++++ G +D+RT+EK E+EA+E
Sbjct: 236 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKE 279
Score = 33.1 bits (72), Expect = 0.008
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = +1
Query: 193 RKPRKCGKGSFKYAWVLDKLKAERERGITIDI 288
R+ ++ GK S+ +W LD ERE+G T+++
Sbjct: 275 REAKEAGKESWYLSWALDSTSEEREKGKTVEV 306
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 45.6 bits (103), Expect = 1e-06
Identities = 18/39 (46%), Positives = 29/39 (74%)
Frame = +3
Query: 84 INIVVIGHVDSGKSTTTGHLIYKCGGIDERTIEKFEKEA 200
+++VV GHVDSGKST G ++++ G I+ R+++K EA
Sbjct: 178 VHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEA 216
Score = 42.7 bits (96), Expect = 1e-05
Identities = 16/26 (61%), Positives = 21/26 (80%)
Frame = +1
Query: 211 GKGSFKYAWVLDKLKAERERGITIDI 288
GKGSF YAW+LD + ER RG+T+D+
Sbjct: 220 GKGSFSYAWLLDTTEEERARGVTMDV 245
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 34.7 bits (76), Expect = 0.003
Identities = 16/29 (55%), Positives = 20/29 (68%)
Frame = +3
Query: 69 KEKVHINIVVIGHVDSGKSTTTGHLIYKC 155
++K H+NI IGHVD GK+T T I KC
Sbjct: 49 RKKPHVNIGTIGHVDHGKTTLTA-AITKC 76
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 34.3 bits (75), Expect = 0.004
Identities = 17/32 (53%), Positives = 19/32 (59%)
Frame = +3
Query: 63 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCG 158
MGK N+ VI HVD GKST T L+ K G
Sbjct: 13 MGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAG 44
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 34.3 bits (75), Expect = 0.004
Identities = 17/32 (53%), Positives = 19/32 (59%)
Frame = +3
Query: 63 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCG 158
MGK N+ VI HVD GKST T L+ K G
Sbjct: 13 MGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAG 44
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 29.5 bits (63), Expect = 0.10
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +3
Query: 87 NIVVIGHVDSGKSTTTGHLIYKCGGIDE 170
NI + H+DSGK+T T ++Y G I +
Sbjct: 61 NIGISAHIDSGKTTFTERVLYYTGRIKD 88
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 28.7 bits (61), Expect = 0.18
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +3
Query: 87 NIVVIGHVDSGKSTTTGHLIYKCG 158
N+ +I H+D+GK+T T ++Y G
Sbjct: 30 NVGIIAHIDAGKTTLTEKMLYYGG 53
Score = 25.8 bits (54), Expect = 1.3
Identities = 11/16 (68%), Positives = 14/16 (87%)
Frame = +1
Query: 238 VLDKLKAERERGITID 285
V+D L AER+RGITI+
Sbjct: 67 VMDYLPAERQRGITIN 82
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 26.2 bits (55), Expect = 0.97
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +3
Query: 87 NIVVIGHVDSGKSTTTGHLIYKCGGIDE 170
N VI H+D GKST + ++ G I+E
Sbjct: 60 NWAVIAHIDHGKSTLSDCILKLTGVINE 87
Score = 25.4 bits (53), Expect = 1.7
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = +1
Query: 241 LDKLKAERERGITI 282
LDKL+ ER RGIT+
Sbjct: 95 LDKLEVERRRGITV 108
>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2310
Score = 25.8 bits (54), Expect = 1.3
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +3
Query: 111 DSGKSTTTGHLIYKCGGIDE 170
+S K TT GH++ +C IDE
Sbjct: 1881 NSVKFTTEGHILLRCMAIDE 1900
>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 25.0 bits (52), Expect = 2.2
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +3
Query: 57 PKMGKEKVHINIVVIGHVDSGKST 128
P + + INI IGHV GKST
Sbjct: 15 PAIISRQATINIGTIGHVAHGKST 38
>SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 647
Score = 24.6 bits (51), Expect = 3.0
Identities = 9/29 (31%), Positives = 15/29 (51%)
Frame = +3
Query: 93 VVIGHVDSGKSTTTGHLIYKCGGIDERTI 179
+V+GH GK+T +Y+ G + I
Sbjct: 45 IVLGHTGCGKTTQIPQFLYEAGWASQNGI 73
>SPAC2G11.11c |prh1||ATP-dependent RNA helicase
Prh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 719
Score = 24.2 bits (50), Expect = 3.9
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +3
Query: 90 IVVIGHVDSGKSTTTGHLIYKC 155
IVV+G SGKST + +C
Sbjct: 115 IVVVGETGSGKSTQIPQFLNEC 136
>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
Prp16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 23.8 bits (49), Expect = 5.2
Identities = 8/23 (34%), Positives = 14/23 (60%)
Frame = +3
Query: 90 IVVIGHVDSGKSTTTGHLIYKCG 158
++V+G SGK+T +Y+ G
Sbjct: 511 LIVVGETGSGKTTQLAQFLYEDG 533
>SPBC2F12.10 |||mitochondrial ribosomal protein subunit
L35|Schizosaccharomyces pombe|chr 2|||Manual
Length = 370
Score = 23.8 bits (49), Expect = 5.2
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +1
Query: 166 TNVPSKSSRRKPRKCGKGSFKY 231
TN+P ++S+R P K F+Y
Sbjct: 261 TNIPIEASKRVPIDTSKAFFQY 282
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 23.8 bits (49), Expect = 5.2
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +3
Query: 87 NIVVIGHVDSGKSTTTGHLIYKCGGIDER 173
N ++ HVD GK+T L+ G I +
Sbjct: 21 NFTLLAHVDHGKTTLADSLLASNGIISSK 49
>SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit
Gpa2 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 354
Score = 23.4 bits (48), Expect = 6.9
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +3
Query: 69 KEKVHINIVVIGHVDSGKSTTTGHL-IYKCGGIDERTIEKF 188
K+K ++++G DSGKST + + I G + I F
Sbjct: 30 KDKKIYKVLLLGASDSGKSTISKQIKILNKNGFSQEEIMTF 70
>SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase
Gpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1448
Score = 23.4 bits (48), Expect = 6.9
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = -1
Query: 62 FWLVTDYNQRVISEIAS 12
FWLV D+N++ EI S
Sbjct: 685 FWLVADFNEKEGLEILS 701
>SPBC19G7.10c |||topoisomerase associated protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 744
Score = 23.4 bits (48), Expect = 6.9
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -1
Query: 65 HFWLVTDYNQRVISEIASCRI 3
HF LV++ ++R SEIA RI
Sbjct: 705 HFTLVSETSKRAPSEIAVVRI 725
>SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 469
Score = 23.4 bits (48), Expect = 6.9
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = +3
Query: 69 KEKVHINIVVIGHVDSGKSTTTGHLI 146
++ + N++V+G SGKST L+
Sbjct: 91 RQGFNFNVLVLGESGSGKSTLVNTLL 116
>SPAC17G8.04c |arc15|arc5, arc5|ARP2/3 actin-organizing complex
subunit Arc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 152
Score = 23.0 bits (47), Expect = 9.1
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -1
Query: 290 AISMVIPRSRSAFSLSNTQAYLKEPLPH 207
A+S +IP++RSA N LK L +
Sbjct: 35 AVSQLIPQARSAIQTGNALQGLKTLLSY 62
>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 991
Score = 23.0 bits (47), Expect = 9.1
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = -3
Query: 57 VSHGLQSACNIRDSLVPN 4
++HGL N DS++PN
Sbjct: 790 MAHGLFGKVNTNDSVIPN 807
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,171,287
Number of Sequences: 5004
Number of extensions: 20025
Number of successful extensions: 89
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 69775820
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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