Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_O17
(290 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 105 5e-24
U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation fact... 105 5e-24
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 105 5e-24
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 105 5e-24
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 105 5e-24
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 63 4e-11
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 55 1e-08
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 55 1e-08
AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical ... 34 0.015
Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical pr... 33 0.034
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 33 0.045
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 33 0.045
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 33 0.045
L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding pro... 32 0.060
AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditi... 32 0.060
Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical pr... 31 0.10
M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 31 0.10
L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical pr... 31 0.18
Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical pr... 30 0.24
Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical pr... 30 0.24
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 30 0.24
AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein... 30 0.24
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 30 0.24
Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical pr... 29 0.73
Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical pr... 29 0.73
Z69792-5|CAA93668.3| 1410|Caenorhabditis elegans Hypothetical pr... 27 2.2
AL132863-4|CAB60575.1| 410|Caenorhabditis elegans Hypothetical ... 27 2.2
AL022270-3|CAB63434.2| 1410|Caenorhabditis elegans Hypothetical ... 27 2.2
Z78200-2|CAB01578.1| 588|Caenorhabditis elegans Hypothetical pr... 27 3.0
U50068-6|AAB37736.2| 1079|Caenorhabditis elegans Hypothetical pr... 26 3.9
AF039050-10|AAC47933.2| 362|Caenorhabditis elegans Seven tm rec... 26 5.2
Z74473-4|CAA98953.1| 390|Caenorhabditis elegans Hypothetical pr... 25 6.8
Z46241-6|CAA86319.1| 190|Caenorhabditis elegans Hypothetical pr... 25 9.1
U70852-1|AAK29815.1| 2361|Caenorhabditis elegans Hypothetical pr... 25 9.1
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 105 bits (252), Expect = 5e-24
Identities = 48/49 (97%), Positives = 49/49 (100%)
Frame = +3
Query: 63 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDERTIEKFEKEAQEM 209
MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGID+RTIEKFEKEAQEM
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEM 49
Score = 59.7 bits (138), Expect = 3e-10
Identities = 26/32 (81%), Positives = 30/32 (93%)
Frame = +1
Query: 193 RKPRKCGKGSFKYAWVLDKLKAERERGITIDI 288
++ ++ GKGSFKYAWVLDKLKAERERGITIDI
Sbjct: 44 KEAQEMGKGSFKYAWVLDKLKAERERGITIDI 75
>U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation factor
protein 4, isoformb protein.
Length = 77
Score = 105 bits (252), Expect = 5e-24
Identities = 48/49 (97%), Positives = 49/49 (100%)
Frame = +3
Query: 63 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDERTIEKFEKEAQEM 209
MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGID+RTIEKFEKEAQEM
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEM 49
Score = 38.7 bits (86), Expect = 7e-04
Identities = 15/24 (62%), Positives = 20/24 (83%)
Frame = +1
Query: 193 RKPRKCGKGSFKYAWVLDKLKAER 264
++ ++ GKGSFKYAWVLDKLK +
Sbjct: 44 KEAQEMGKGSFKYAWVLDKLKVTK 67
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 105 bits (252), Expect = 5e-24
Identities = 48/49 (97%), Positives = 49/49 (100%)
Frame = +3
Query: 63 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDERTIEKFEKEAQEM 209
MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGID+RTIEKFEKEAQEM
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEM 49
Score = 59.7 bits (138), Expect = 3e-10
Identities = 26/32 (81%), Positives = 30/32 (93%)
Frame = +1
Query: 193 RKPRKCGKGSFKYAWVLDKLKAERERGITIDI 288
++ ++ GKGSFKYAWVLDKLKAERERGITIDI
Sbjct: 44 KEAQEMGKGSFKYAWVLDKLKAERERGITIDI 75
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 105 bits (252), Expect = 5e-24
Identities = 48/49 (97%), Positives = 49/49 (100%)
Frame = +3
Query: 63 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDERTIEKFEKEAQEM 209
MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGID+RTIEKFEKEAQEM
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEM 49
Score = 59.7 bits (138), Expect = 3e-10
Identities = 26/32 (81%), Positives = 30/32 (93%)
Frame = +1
Query: 193 RKPRKCGKGSFKYAWVLDKLKAERERGITIDI 288
++ ++ GKGSFKYAWVLDKLKAERERGITIDI
Sbjct: 44 KEAQEMGKGSFKYAWVLDKLKAERERGITIDI 75
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 105 bits (252), Expect = 5e-24
Identities = 48/49 (97%), Positives = 49/49 (100%)
Frame = +3
Query: 63 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDERTIEKFEKEAQEM 209
MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGID+RTIEKFEKEAQEM
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEM 49
Score = 59.7 bits (138), Expect = 3e-10
Identities = 26/32 (81%), Positives = 30/32 (93%)
Frame = +1
Query: 193 RKPRKCGKGSFKYAWVLDKLKAERERGITIDI 288
++ ++ GKGSFKYAWVLDKLKAERERGITIDI
Sbjct: 44 KEAQEMGKGSFKYAWVLDKLKAERERGITIDI 75
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 62.9 bits (146), Expect = 4e-11
Identities = 26/47 (55%), Positives = 37/47 (78%)
Frame = +3
Query: 66 GKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDERTIEKFEKEAQE 206
G K HIN+V +GHVD+GKST G L++ G +D+RT+EK+E+EA+E
Sbjct: 104 GTHKEHINMVFVGHVDAGKSTIGGQLMFLTGMVDKRTLEKYEREAKE 150
Score = 27.9 bits (59), Expect = 1.3
Identities = 10/32 (31%), Positives = 21/32 (65%)
Frame = +1
Query: 193 RKPRKCGKGSFKYAWVLDKLKAERERGITIDI 288
R+ ++ G+ S+ +W +D ERE+G T+++
Sbjct: 146 REAKEKGRESWYLSWCMDTNDEEREKGKTVEV 177
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 54.8 bits (126), Expect = 1e-08
Identities = 23/43 (53%), Positives = 33/43 (76%)
Frame = +3
Query: 72 EKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDERTIEKFEKEA 200
+K IN++V+GHVD+GKST GHL++ +D RTI+KF+ EA
Sbjct: 167 DKDLINLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFKHEA 209
Score = 45.2 bits (102), Expect = 8e-06
Identities = 22/44 (50%), Positives = 27/44 (61%)
Frame = +1
Query: 157 VVSTNVPSKSSRRKPRKCGKGSFKYAWVLDKLKAERERGITIDI 288
VV + K R GK SF YAWVLD+ + ERERG+T+DI
Sbjct: 196 VVDSRTIDKFKHEAARN-GKASFAYAWVLDETEEERERGVTMDI 238
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 54.8 bits (126), Expect = 1e-08
Identities = 23/43 (53%), Positives = 33/43 (76%)
Frame = +3
Query: 72 EKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDERTIEKFEKEA 200
+K IN++V+GHVD+GKST GHL++ +D RTI+KF+ EA
Sbjct: 185 DKDLINLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFKHEA 227
Score = 45.2 bits (102), Expect = 8e-06
Identities = 22/44 (50%), Positives = 27/44 (61%)
Frame = +1
Query: 157 VVSTNVPSKSSRRKPRKCGKGSFKYAWVLDKLKAERERGITIDI 288
VV + K R GK SF YAWVLD+ + ERERG+T+DI
Sbjct: 214 VVDSRTIDKFKHEAARN-GKASFAYAWVLDETEEERERGVTMDI 256
>AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical
protein Y119D3B.14 protein.
Length = 689
Score = 34.3 bits (75), Expect = 0.015
Identities = 15/26 (57%), Positives = 18/26 (69%)
Frame = +3
Query: 87 NIVVIGHVDSGKSTTTGHLIYKCGGI 164
NI VI HVD+GK+T T L+Y G I
Sbjct: 27 NIGVIAHVDAGKTTVTERLLYLAGAI 52
>Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical
protein F29C12.4 protein.
Length = 750
Score = 33.1 bits (72), Expect = 0.034
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +3
Query: 87 NIVVIGHVDSGKSTTTGHLIYKCGGID 167
NI + H+DSGK+T T ++Y G ID
Sbjct: 46 NIGISAHIDSGKTTVTERILYYAGRID 72
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 32.7 bits (71), Expect = 0.045
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +3
Query: 69 KEKVHINIVVIGHVDSGKSTTT 134
++K H+N+ IGHVD GK+T T
Sbjct: 45 RDKPHLNVGTIGHVDHGKTTLT 66
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 32.7 bits (71), Expect = 0.045
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +3
Query: 69 KEKVHINIVVIGHVDSGKSTTT 134
++K H+N+ IGHVD GK+T T
Sbjct: 46 RDKPHLNVGTIGHVDHGKTTLT 67
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 32.7 bits (71), Expect = 0.045
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +3
Query: 69 KEKVHINIVVIGHVDSGKSTTT 134
++K H+N+ IGHVD GK+T T
Sbjct: 46 RDKPHLNVGTIGHVDHGKTTLT 67
>L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding
protein protein.
Length = 593
Score = 32.3 bits (70), Expect = 0.060
Identities = 15/36 (41%), Positives = 23/36 (63%)
Frame = +3
Query: 42 VIRD*PKMGKEKVHINIVVIGHVDSGKSTTTGHLIY 149
+IRD P K+ + + V+G+VD+GKST G L +
Sbjct: 128 IIRD-PPTEKDFIEARVAVVGNVDAGKSTLLGVLTH 162
>AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditis
gtp-binding proteinprotein 1 protein.
Length = 613
Score = 32.3 bits (70), Expect = 0.060
Identities = 15/36 (41%), Positives = 23/36 (63%)
Frame = +3
Query: 42 VIRD*PKMGKEKVHINIVVIGHVDSGKSTTTGHLIY 149
+IRD P K+ + + V+G+VD+GKST G L +
Sbjct: 128 IIRD-PPTEKDFIEARVAVVGNVDAGKSTLLGVLTH 162
>Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical
protein F25H5.4 protein.
Length = 852
Score = 31.5 bits (68), Expect = 0.10
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = +3
Query: 87 NIVVIGHVDSGKSTTTGHLIYKCG 158
N+ VI HVD GKST T L+ K G
Sbjct: 21 NMSVIAHVDHGKSTLTDSLVSKAG 44
>M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation factor
protein.
Length = 852
Score = 31.5 bits (68), Expect = 0.10
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = +3
Query: 87 NIVVIGHVDSGKSTTTGHLIYKCG 158
N+ VI HVD GKST T L+ K G
Sbjct: 21 NMSVIAHVDHGKSTLTDSLVSKAG 44
>L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical
protein ZK1236.1 protein.
Length = 645
Score = 30.7 bits (66), Expect = 0.18
Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Frame = +3
Query: 87 NIVVIGHVDSGKSTTTGHLIYKCGGI---DERTIEKFEKEAQ 203
N ++ HVD GKST L+ CG + ++ ++K + E +
Sbjct: 44 NFGIVAHVDHGKSTLADRLLEMCGAVPPGQKQMLDKLQVERE 85
Score = 27.9 bits (59), Expect = 1.3
Identities = 11/15 (73%), Positives = 14/15 (93%)
Frame = +1
Query: 238 VLDKLKAERERGITI 282
+LDKL+ ERERGIT+
Sbjct: 76 MLDKLQVERERGITV 90
>Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical protein
F15D3.1a protein.
Length = 3674
Score = 30.3 bits (65), Expect = 0.24
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = +3
Query: 57 PKMGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGG--IDERTIEKFEKEAQEMW 212
PK +EK+ I + +V+ G TTG +CGG ++ R + + AQE W
Sbjct: 1299 PKGFEEKLEKVITTLSNVEMGLDDTTGIDGSECGGALMEVRALVRMLDGAQEKW 1352
>Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical protein
F15D3.1a protein.
Length = 3674
Score = 30.3 bits (65), Expect = 0.24
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = +3
Query: 57 PKMGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGG--IDERTIEKFEKEAQEMW 212
PK +EK+ I + +V+ G TTG +CGG ++ R + + AQE W
Sbjct: 1299 PKGFEEKLEKVITTLSNVEMGLDDTTGIDGSECGGALMEVRALVRMLDGAQEKW 1352
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 30.3 bits (65), Expect = 0.24
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = +3
Query: 75 KVHINIVVIGHVDSGKSTTT 134
K+++N+ IGH+D GK+T T
Sbjct: 43 KINVNVGTIGHIDHGKTTLT 62
>AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein
protein.
Length = 3674
Score = 30.3 bits (65), Expect = 0.24
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = +3
Query: 57 PKMGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGG--IDERTIEKFEKEAQEMW 212
PK +EK+ I + +V+ G TTG +CGG ++ R + + AQE W
Sbjct: 1299 PKGFEEKLEKVITTLSNVEMGLDDTTGIDGSECGGALMEVRALVRMLDGAQEKW 1352
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 30.3 bits (65), Expect = 0.24
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = +3
Query: 75 KVHINIVVIGHVDSGKSTTT 134
K+++N+ IGH+D GK+T T
Sbjct: 43 KINVNVGTIGHIDHGKTTLT 62
>Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical
protein C47B2.7b protein.
Length = 500
Score = 28.7 bits (61), Expect = 0.73
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +3
Query: 84 INIVVIGHVDSGKSTTT 134
+N+ ++GHVDSGK+T T
Sbjct: 14 LNLGILGHVDSGKTTLT 30
>Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical
protein C47B2.7a protein.
Length = 459
Score = 28.7 bits (61), Expect = 0.73
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +3
Query: 84 INIVVIGHVDSGKSTTT 134
+N+ ++GHVDSGK+T T
Sbjct: 14 LNLGILGHVDSGKTTLT 30
>Z69792-5|CAA93668.3| 1410|Caenorhabditis elegans Hypothetical
protein F40E10.4 protein.
Length = 1410
Score = 27.1 bits (57), Expect = 2.2
Identities = 18/63 (28%), Positives = 24/63 (38%), Gaps = 1/63 (1%)
Frame = +2
Query: 53 LTKNGQRKGSXXXXXXXXXXXXXXXNN-WSLDLQMRWYRRTYHRKVREGSPGNVVRVPSN 229
LT NG R + NN W+ D ++RW R+ + EG V P N
Sbjct: 169 LTLNGNRLTTFEEPSNARFRQLDLFNNPWNCDCRLRWMRKWLEK--AEGQNKTVCATPLN 226
Query: 230 TLG 238
G
Sbjct: 227 LQG 229
>AL132863-4|CAB60575.1| 410|Caenorhabditis elegans Hypothetical
protein Y37H2A.6 protein.
Length = 410
Score = 27.1 bits (57), Expect = 2.2
Identities = 13/46 (28%), Positives = 24/46 (52%)
Frame = +3
Query: 45 IRD*PKMGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDERTIE 182
IR+ K+GK K+ + ++ D GKS +L + C + + +E
Sbjct: 11 IREAWKLGKNKIFLRACILYEYDQGKSVYESYLSF-CDAVGDDFME 55
>AL022270-3|CAB63434.2| 1410|Caenorhabditis elegans Hypothetical
protein F40E10.4 protein.
Length = 1410
Score = 27.1 bits (57), Expect = 2.2
Identities = 18/63 (28%), Positives = 24/63 (38%), Gaps = 1/63 (1%)
Frame = +2
Query: 53 LTKNGQRKGSXXXXXXXXXXXXXXXNN-WSLDLQMRWYRRTYHRKVREGSPGNVVRVPSN 229
LT NG R + NN W+ D ++RW R+ + EG V P N
Sbjct: 169 LTLNGNRLTTFEEPSNARFRQLDLFNNPWNCDCRLRWMRKWLEK--AEGQNKTVCATPLN 226
Query: 230 TLG 238
G
Sbjct: 227 LQG 229
>Z78200-2|CAB01578.1| 588|Caenorhabditis elegans Hypothetical
protein T04H1.2 protein.
Length = 588
Score = 26.6 bits (56), Expect = 3.0
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +3
Query: 39 IVIRD*PKMGKEKVHINIVVIGHVDSGKSTTTGHLIYKC 155
+++R P+ ++ + + + V+G D GKST G L C
Sbjct: 155 VLVRKVPE-SQQFIEVRLAVVGGCDVGKSTLCGVLTQGC 192
>U50068-6|AAB37736.2| 1079|Caenorhabditis elegans Hypothetical
protein C01G5.4 protein.
Length = 1079
Score = 26.2 bits (55), Expect = 3.9
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +1
Query: 115 PASPQQLVT*STNAVVSTNVPSKSS 189
P+SPQQL NA STNV + S
Sbjct: 120 PSSPQQLHLAFANATTSTNVTNAKS 144
>AF039050-10|AAC47933.2| 362|Caenorhabditis elegans Seven tm
receptor protein 82 protein.
Length = 362
Score = 25.8 bits (54), Expect = 5.2
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +2
Query: 179 RKVREGSPGNVVRVPSNTLG 238
R ++E S +RVP+NTLG
Sbjct: 323 RYIKESSTATGIRVPANTLG 342
>Z74473-4|CAA98953.1| 390|Caenorhabditis elegans Hypothetical
protein F56H9.4 protein.
Length = 390
Score = 25.4 bits (53), Expect = 6.8
Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +3
Query: 69 KEKVHINIVVIGHVDSGKSTTTGHL-IYKCGG 161
++K + +++IG +SGKST + I CGG
Sbjct: 40 RKKKALKLLIIGPGESGKSTIVKQVRILHCGG 71
>Z46241-6|CAA86319.1| 190|Caenorhabditis elegans Hypothetical
protein C38D4.8 protein.
Length = 190
Score = 25.0 bits (52), Expect = 9.1
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +3
Query: 66 GKEKVHINIVVIGHVDSGKSTTTGHL 143
G K +NIVV+G +SGK+T L
Sbjct: 12 GLGKKDVNIVVVGLDNSGKTTILNQL 37
>U70852-1|AAK29815.1| 2361|Caenorhabditis elegans Hypothetical protein
F45E4.4 protein.
Length = 2361
Score = 25.0 bits (52), Expect = 9.1
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +3
Query: 87 NIVVIGHVDSGKSTTTGHLIYKCGGIDERTIEKFEKEAQE 206
+I+ GH+D S GH +K GI E FE E ++
Sbjct: 1633 SIIPSGHIDQPISLPRGHTGFKPAGIVNED-ELFETERKQ 1671
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,501,419
Number of Sequences: 27780
Number of extensions: 112423
Number of successful extensions: 371
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 356
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 371
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 280685548
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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