Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_O16
(436 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1253 - 35753546-35753686,35753759-35753885,35753970-357541... 198 1e-51
03_06_0466 - 34134138-34134278,34134355-34134481,34134558-341347... 197 4e-51
10_06_0053 - 10110617-10111271,10112023-10112417,10112565-101126... 123 7e-29
05_03_0026 + 7466017-7466034,7466340-7466405,7466572-7466833,746... 51 4e-07
09_04_0614 - 18962141-18962716,18962839-18963119,18964092-18964293 31 0.54
06_02_0197 - 12912818-12913411,12913505-12913732 30 0.94
12_01_0932 + 9253975-9254676,9254976-9255092,9255160-9255192 29 1.6
02_02_0401 + 9847398-9847463,9848916-9849019,9849873-9849876,984... 27 5.0
03_06_0572 + 34812203-34812278,34812485-34813768,34813973-348140... 27 6.6
12_01_0986 - 10009518-10009839,10009958-10011544,10012515-10013311 27 8.7
10_08_0639 + 19505934-19506088,19506584-19506633,19508153-195088... 27 8.7
09_04_0649 + 19212097-19212176,19212448-19212579,19212789-192131... 27 8.7
09_02_0121 + 4502628-4502696,4503727-4503829,4504205-4504328,450... 27 8.7
06_03_1146 - 28004896-28005554,28005664-28005844 27 8.7
01_04_0061 + 15555096-15555428,15555768-15555775,15557117-15557495 27 8.7
>01_06_1253 -
35753546-35753686,35753759-35753885,35753970-35754125,
35754761-35754853,35757132-35757265,35757339-35757465,
35757550-35757705,35758321-35758325
Length = 312
Score = 198 bits (484), Expect = 1e-51
Identities = 93/140 (66%), Positives = 106/140 (75%)
Frame = +2
Query: 17 CSRYRNG*TSGYSHGAQARESSSRAAMGRQGIKKAHMGTRWKANPFGGASHAKGIVLEKV 196
C G T G G + + + KK+H+G WK PF G+SHAKGIVLEK+
Sbjct: 166 CPSVNMGKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKI 224
Query: 197 GVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDI 376
G+EAKQPNSAIRKC RVQL+KNGKK+ AFVP DGCLN IEENDEVL+AGFGRKGHAVGDI
Sbjct: 225 GIEAKQPNSAIRKCARVQLVKNGKKIAAFVPNDGCLNFIEENDEVLIAGFGRKGHAVGDI 284
Query: 377 PGVRFKVVKVANVSLLALYK 436
PGVRFKVVKV+ VSLLAL+K
Sbjct: 285 PGVRFKVVKVSGVSLLALFK 304
Score = 197 bits (480), Expect = 4e-51
Identities = 92/134 (68%), Positives = 105/134 (78%)
Frame = +2
Query: 35 G*TSGYSHGAQARESSSRAAMGRQGIKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAKQ 214
G T G G + + + KK+H+G WK PF G+SHAKGIVLEK+G+EAKQ
Sbjct: 2 GKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQ 60
Query: 215 PNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFK 394
PNSAIRKC RVQL+KNGKK+ AFVP DGCLN IEENDEVL+AGFGRKGHAVGDIPGVRFK
Sbjct: 61 PNSAIRKCARVQLVKNGKKIAAFVPNDGCLNFIEENDEVLIAGFGRKGHAVGDIPGVRFK 120
Query: 395 VVKVANVSLLALYK 436
VVKV+ VSLLAL+K
Sbjct: 121 VVKVSGVSLLALFK 134
Score = 41.9 bits (94), Expect = 2e-04
Identities = 19/35 (54%), Positives = 22/35 (62%)
Frame = +3
Query: 15 RVRAIVMGKPRGIRTARKHVNHRREQRWADKESKK 119
R ++ MGK RG+ RK HRR QRWADK KK
Sbjct: 165 RCPSVNMGKTRGMGAGRKLKTHRRNQRWADKAYKK 199
Score = 40.7 bits (91), Expect = 5e-04
Identities = 18/29 (62%), Positives = 19/29 (65%)
Frame = +3
Query: 33 MGKPRGIRTARKHVNHRREQRWADKESKK 119
MGK RG+ RK HRR QRWADK KK
Sbjct: 1 MGKTRGMGAGRKLKTHRRNQRWADKAYKK 29
>03_06_0466 -
34134138-34134278,34134355-34134481,34134558-34134713,
34135831-34135835
Length = 142
Score = 197 bits (480), Expect = 4e-51
Identities = 92/134 (68%), Positives = 105/134 (78%)
Frame = +2
Query: 35 G*TSGYSHGAQARESSSRAAMGRQGIKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAKQ 214
G T G G + + + KK+H+G WK PF G+SHAKGIVLEK+G+EAKQ
Sbjct: 2 GKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQ 60
Query: 215 PNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFK 394
PNSAIRKC RVQL+KNGKK+ AFVP DGCLN IEENDEVL+AGFGRKGHAVGDIPGVRFK
Sbjct: 61 PNSAIRKCARVQLVKNGKKIAAFVPNDGCLNFIEENDEVLIAGFGRKGHAVGDIPGVRFK 120
Query: 395 VVKVANVSLLALYK 436
VVKV+ VSLLAL+K
Sbjct: 121 VVKVSGVSLLALFK 134
Score = 40.7 bits (91), Expect = 5e-04
Identities = 18/29 (62%), Positives = 19/29 (65%)
Frame = +3
Query: 33 MGKPRGIRTARKHVNHRREQRWADKESKK 119
MGK RG+ RK HRR QRWADK KK
Sbjct: 1 MGKTRGMGAGRKLKTHRRNQRWADKAYKK 29
>10_06_0053 -
10110617-10111271,10112023-10112417,10112565-10112650,
10112973-10113021,10114164-10114290,10114372-10114526,
10114730-10114948
Length = 561
Score = 123 bits (296), Expect = 7e-29
Identities = 57/101 (56%), Positives = 68/101 (67%)
Frame = +2
Query: 41 TSGYSHGAQARESSSRAAMGRQGIKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAKQPN 220
T G G + + + KK+H G WK PF G+SHAKGIVLEK+G+EAKQPN
Sbjct: 75 TCGMGAGRKLKTHRRNQRWADKAYKKSHFGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPN 133
Query: 221 SAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAG 343
SAI KC RVQL+KNGKK+ AFVP DGCLN I+EN+ V G
Sbjct: 134 SAICKCARVQLVKNGKKIAAFVPNDGCLNFIKENEVAYVDG 174
Score = 36.7 bits (81), Expect = 0.008
Identities = 20/37 (54%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +3
Query: 12 DRVRAIVMG-KPRGIRTARKHVNHRREQRWADKESKK 119
+RVRA G K G+ RK HRR QRWADK KK
Sbjct: 64 ERVRAWSCGAKTCGMGAGRKLKTHRRNQRWADKAYKK 100
>05_03_0026 +
7466017-7466034,7466340-7466405,7466572-7466833,
7467254-7467294
Length = 128
Score = 51.2 bits (117), Expect = 4e-07
Identities = 22/27 (81%), Positives = 25/27 (92%)
Frame = +2
Query: 323 DEVLVAGFGRKGHAVGDIPGVRFKVVK 403
DEVL++GFG KGHAVGDI GVRF+VVK
Sbjct: 67 DEVLISGFGHKGHAVGDIRGVRFEVVK 93
>09_04_0614 - 18962141-18962716,18962839-18963119,18964092-18964293
Length = 352
Score = 30.7 bits (66), Expect = 0.54
Identities = 18/44 (40%), Positives = 21/44 (47%)
Frame = -2
Query: 405 TLTTLNLTPGMSPTAWPLRPNPATNTSSFSSMWLRQPSRGTNAV 274
TL+ LNL G SP P P P + SM + QP TN V
Sbjct: 254 TLSGLNLNLGSSPAMPPPPPPPPQSILQAMSMPMNQPRSTTNQV 297
>06_02_0197 - 12912818-12913411,12913505-12913732
Length = 273
Score = 29.9 bits (64), Expect = 0.94
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = -3
Query: 248 VHEHTYEWLNSAAWLQRQLFRGRCP*HEMHHRR 150
V +H WL +A+ LQR +FR H++HH+R
Sbjct: 186 VDDHCGLWLPAASPLQR-VFRNNAAYHDVHHQR 217
>12_01_0932 + 9253975-9254676,9254976-9255092,9255160-9255192
Length = 283
Score = 29.1 bits (62), Expect = 1.6
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +2
Query: 11 RSCSRYRNG*TSGYSHGAQARESSSRAAMGRQGI 112
R+C R +G +GY HG + + SSR + R G+
Sbjct: 184 RACYRV-HGMATGYCHGCRCQRCSSRPSRDRDGV 216
>02_02_0401 +
9847398-9847463,9848916-9849019,9849873-9849876,
9849968-9851230
Length = 478
Score = 27.5 bits (58), Expect = 5.0
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = +2
Query: 11 RSCSRYRNG*TSGYSHGAQARESSSRAAMGRQG 109
R+ S+Y+ G +S Y GA ++ ++ +QG
Sbjct: 283 RTSSKYKQGASSKYKQGASSKSKQGTSSKSKQG 315
>03_06_0572 +
34812203-34812278,34812485-34813768,34813973-34814049,
34814299-34814646
Length = 594
Score = 27.1 bits (57), Expect = 6.6
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -2
Query: 399 TTLNLTPGMSPTAWPLRPNPATNTSS 322
TT TP M+P P P+P TN ++
Sbjct: 310 TTTTPTPFMNPVTAPTMPSPVTNPAT 335
>12_01_0986 - 10009518-10009839,10009958-10011544,10012515-10013311
Length = 901
Score = 26.6 bits (56), Expect = 8.7
Identities = 15/52 (28%), Positives = 23/52 (44%)
Frame = -1
Query: 400 NHLKSDSRNVTNSVAFTTESCN*HLIVLLNVVEATITRHECCHFLAVLNELY 245
+H+K V NS+ F I+LL+ + I C +L+V E Y
Sbjct: 376 SHMKEQWEQVHNSIGFVFSQQGIRDILLLSYYDLPINLKTCLLYLSVFPEDY 427
>10_08_0639 +
19505934-19506088,19506584-19506633,19508153-19508893,
19509762-19509922
Length = 368
Score = 26.6 bits (56), Expect = 8.7
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +2
Query: 86 RAAMGRQG-IKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAI 229
RAA G G + AH G RW G + A G+VL + V +++ S +
Sbjct: 9 RAAAGLLGPLGGAHGGGRWNTAVAVGVTAAAGLVLVVIVVSSRRGLSQV 57
>09_04_0649 +
19212097-19212176,19212448-19212579,19212789-19213196,
19213853-19213943,19214198-19214251
Length = 254
Score = 26.6 bits (56), Expect = 8.7
Identities = 15/52 (28%), Positives = 24/52 (46%)
Frame = +1
Query: 76 IIVASSDGPTRNQKSPHGYEMEGEPLRWCISC*GHRPRKSWR*SQAAEFSHS 231
+ + S+ P+R + + EG PL++C G P + Q EFS S
Sbjct: 203 LCLLSNKPPSREELETVENKFEGIPLKFCHVDNGRNPSSRYTSFQTPEFSSS 254
>09_02_0121 +
4502628-4502696,4503727-4503829,4504205-4504328,
4505963-4506306,4506383-4506487,4507907-4508288,
4509173-4509437,4509936-4510094,4511150-4511201,
4511266-4511462,4512865-4513350,4513797-4514093
Length = 860
Score = 26.6 bits (56), Expect = 8.7
Identities = 12/51 (23%), Positives = 22/51 (43%)
Frame = +2
Query: 59 GAQARESSSRAAMGRQGIKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAK 211
G++ S S A ++K WK +HA+ ++ +KV V +
Sbjct: 229 GSRPSSSCSSRAQQLSSVQKVVPNKEWKPKSTNKPAHAENVICDKVPVSVE 279
>06_03_1146 - 28004896-28005554,28005664-28005844
Length = 279
Score = 26.6 bits (56), Expect = 8.7
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -2
Query: 384 TPGMSPTAWPLRPNPATNTSSFSS 313
TP SP+ P+ P PA TS+ SS
Sbjct: 184 TPSPSPSVSPMAPAPAPTTSTPSS 207
>01_04_0061 + 15555096-15555428,15555768-15555775,15557117-15557495
Length = 239
Score = 26.6 bits (56), Expect = 8.7
Identities = 11/39 (28%), Positives = 16/39 (41%)
Frame = -2
Query: 165 DAPPKGFAFHLVPMWAFLIPCRPIAARDDDSRACAPCEY 49
D PP G + W + PI+ + SR C C +
Sbjct: 3 DRPPTGIQSNPPMRWGMGVSGTPISRGGESSRGCGRCSH 41
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,273,517
Number of Sequences: 37544
Number of extensions: 295649
Number of successful extensions: 913
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 897
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 909
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 826450812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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