Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_O16
         (436 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70684-7|CAA94601.1|  143|Caenorhabditis elegans Hypothetical pr...   212   1e-55
Z92838-1|CAB07406.1|  157|Caenorhabditis elegans Hypothetical pr...    51   3e-07
U37429-6|AAN63416.2|  342|Caenorhabditis elegans Serpentine rece...    31   0.36 
Z81128-8|CAB03402.1|  811|Caenorhabditis elegans Hypothetical pr...    27   4.4  
U58750-2|AAB00642.1|  615|Caenorhabditis elegans Polo kinase pro...    27   4.4  
AF059024-1|AAC14425.1|  615|Caenorhabditis elegans polo-like kin...    27   4.4  
AL032655-6|CAA21722.1|  462|Caenorhabditis elegans Hypothetical ...    27   5.9  
Z92782-8|CAB07185.1|  197|Caenorhabditis elegans Hypothetical pr...    27   7.8  

>Z70684-7|CAA94601.1|  143|Caenorhabditis elegans Hypothetical
           protein F28D1.7 protein.
          Length = 143

 Score =  212 bits (517), Expect = 1e-55
 Identities = 95/108 (87%), Positives = 104/108 (96%)
 Frame = +2

Query: 113 KKAHMGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPR 292
           KKAH+GTRWK+NPFGGASHAKGIVLEK+GVEAKQPNSAIRKCVRVQLIKNGKK+TAFVP 
Sbjct: 28  KKAHIGTRWKSNPFGGASHAKGIVLEKIGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPN 87

Query: 293 DGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYK 436
           DGCLN +EENDEVLV+GFGR GHAVGDIPGVRFK+VKVAN SL+AL+K
Sbjct: 88  DGCLNFVEENDEVLVSGFGRSGHAVGDIPGVRFKIVKVANTSLIALFK 135



 Score = 44.8 bits (101), Expect = 3e-05
 Identities = 19/29 (65%), Positives = 22/29 (75%)
 Frame = +3

Query: 33  MGKPRGIRTARKHVNHRREQRWADKESKK 119
           MGKP+G+ TARK   HR+EQRW DK  KK
Sbjct: 1   MGKPKGLCTARKLKTHRQEQRWNDKRYKK 29


>Z92838-1|CAB07406.1|  157|Caenorhabditis elegans Hypothetical
           protein T03D8.2 protein.
          Length = 157

 Score = 51.2 bits (117), Expect = 3e-07
 Identities = 34/85 (40%), Positives = 50/85 (58%)
 Frame = +2

Query: 101 RQGIKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTA 280
           R G  K    ++ K+    G SH KGIVL+ V    K+PNS  RKC  V+L   G +V A
Sbjct: 54  RNGPPKRRARSKDKS-AISGYSHYKGIVLKTVIRHPKKPNSGNRKCAIVRL-STGAEVCA 111

Query: 281 FVPRDGCLNHIEENDEVLVAGFGRK 355
           ++P  G  ++++E+ +VLV G GR+
Sbjct: 112 YIPNVG--HNLQEHSQVLVKG-GRR 133


>U37429-6|AAN63416.2|  342|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 69 protein.
          Length = 342

 Score = 31.1 bits (67), Expect = 0.36
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -2

Query: 150 GFAFHLVPMWAFLIPCRPIAARDDDSRACAPCEYPEVYPL 31
           GF   L+ MW F+IPC+  A  D +       EY +V+ +
Sbjct: 145 GFLIPLIFMW-FMIPCKSYAELDSEGSGGLDIEYKKVFSI 183


>Z81128-8|CAB03402.1|  811|Caenorhabditis elegans Hypothetical
           protein T23D8.9a protein.
          Length = 811

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = +2

Query: 275 TAFVPRDGCLNHIEEN 322
           T FVP+DG LN I+EN
Sbjct: 653 TPFVPKDGVLNVIDEN 668


>U58750-2|AAB00642.1|  615|Caenorhabditis elegans Polo kinase
           protein 3 protein.
          Length = 615

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = -1

Query: 418 RHVCYLNHLKSDSRNVTNSVAFTTESCN*HLIVLLNVVEATITRHE 281
           R++   +H   DS+NV     FT E C+ + ++ LN     +T HE
Sbjct: 93  RNIVQFHHFFEDSQNVY----FTLELCSKNSLMELNKQRGPLTEHE 134


>AF059024-1|AAC14425.1|  615|Caenorhabditis elegans polo-like kinase
           protein.
          Length = 615

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = -1

Query: 418 RHVCYLNHLKSDSRNVTNSVAFTTESCN*HLIVLLNVVEATITRHE 281
           R++   +H   DS+NV     FT E C+ + ++ LN     +T HE
Sbjct: 93  RNIVQFHHFFEDSQNVY----FTLELCSKNSLMELNKQRGPLTEHE 134


>AL032655-6|CAA21722.1|  462|Caenorhabditis elegans Hypothetical
           protein Y6B3B.11 protein.
          Length = 462

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +2

Query: 56  HGAQARESSSRAAMGRQGIKKAHMGTRWKANPFG 157
           +G +A+   S  A   QG+ KA +  RW   P G
Sbjct: 277 NGVEAQTQLSSVANCIQGLVKAELALRWSDTPHG 310


>Z92782-8|CAB07185.1|  197|Caenorhabditis elegans Hypothetical
           protein F14F8.9 protein.
          Length = 197

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 10/36 (27%), Positives = 21/36 (58%)
 Frame = +2

Query: 299 CLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKV 406
           C N + E+DEV+    G+  H+   +P +  K++++
Sbjct: 129 CKNKLIEHDEVVTLIIGKGNHSRHQVPVIYNKLIEI 164


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,741,458
Number of Sequences: 27780
Number of extensions: 232481
Number of successful extensions: 631
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 612
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 631
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 735312162
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)