Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_O15
         (239 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF106575-17|AAD56300.2|  333|Caenorhabditis elegans Serpentine r...    26   3.1  
AF016433-10|AAB65387.1|  338|Caenorhabditis elegans Seven tm rec...    25   5.4  
AF016659-1|AAB66047.3| 1251|Caenorhabditis elegans Hypothetical ...    25   7.2  
AL033514-32|CAA22112.1|  344|Caenorhabditis elegans Hypothetical...    25   9.5  

>AF106575-17|AAD56300.2|  333|Caenorhabditis elegans Serpentine
           receptor, class h protein5 protein.
          Length = 333

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
 Frame = -1

Query: 170 LFNAAISCAIXCVIYXY*IXRQP-KTAKYLNYFSVHFTSPY*IKTELSLVWK 18
           + + +IS  I  V +   I + P   +KY NY   H  S   ++  +  +WK
Sbjct: 19  IISTSISVPIYIVAFWILIFKSPVHFSKYRNYLVAHVFSGLLLELHMGTIWK 70


>AF016433-10|AAB65387.1|  338|Caenorhabditis elegans Seven tm
           receptor protein 130 protein.
          Length = 338

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -1

Query: 170 LFNAAISCAIXCVIYXY*IXRQPKTAKYLNYFSVHFT 60
           LF A +SC I  + +   I    KT K LN FS+  +
Sbjct: 200 LFGAFLSCNIMSICFGTCIVCAYKTYKKLNDFSIQMS 236


>AF016659-1|AAB66047.3| 1251|Caenorhabditis elegans Hypothetical
           protein F40E12.2 protein.
          Length = 1251

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -1

Query: 47  IKTELSLVWKPSAEF 3
           +KT+L ++WK SA F
Sbjct: 603 VKTDLEMIWKNSASF 617


>AL033514-32|CAA22112.1|  344|Caenorhabditis elegans Hypothetical
           protein Y75B8A.34 protein.
          Length = 344

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = -1

Query: 218 SSRVILGKNFLILANVLFNAAISCAIXCV 132
           +SR+  G N +    +  +++ISCA+ C+
Sbjct: 155 NSRIFDGANVVAPVLLALSSSISCAVICI 183


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,616,665
Number of Sequences: 27780
Number of extensions: 42181
Number of successful extensions: 75
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 12,740,198
effective HSP length: 59
effective length of database: 11,101,178
effective search space used: 222023560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)