Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_O14
         (107 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC56E4.07 |||N-acetyltransferase |Schizosaccharomyces pombe|ch...    25   1.7  
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual      23   4.0  
SPCC364.01 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    22   9.3  

>SPAC56E4.07 |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 235

 Score = 24.6 bits (51), Expect = 1.7
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +1

Query: 43  YLGNFVYWLYISELINK 93
           Y  NF+YW Y ++++ K
Sbjct: 106 YYSNFLYWWYGAQIVQK 122


>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1489

 Score = 23.4 bits (48), Expect = 4.0
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = +1

Query: 46   LGNFVYWLYISELI 87
            +G FVYW Y++ ++
Sbjct: 1031 IGKFVYWAYVAPVL 1044


>SPCC364.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 320

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -1

Query: 92  LLINSLI*SQYTKLPKYNVLY*IHL 18
           L++ S +  Q+  LPK ++LY I L
Sbjct: 273 LVLRSSLLHQWYSLPKQSILYEIRL 297


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 414,480
Number of Sequences: 5004
Number of extensions: 3872
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 2,362,478
effective HSP length: 17
effective length of database: 2,277,410
effective search space used: 40993380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)