Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_O14
         (107 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0212 - 1605544-1605647,1605799-1605842,1606189-1606230,160...    29   0.71 
03_01_0099 + 778521-778736,779521-779775,779831-779924,780064-78...    25   6.6  

>12_01_0212 -
           1605544-1605647,1605799-1605842,1606189-1606230,
           1606306-1606394,1606477-1606521,1606801-1606845,
           1606874-1606981,1607065-1607150,1607553-1607640,
           1608185-1608385,1608790-1608865,1608951-1609000,
           1609082-1609144,1609225-1609278,1609395-1609497,
           1610010-1610050,1610654-1610685,1612086-1612224
          Length = 469

 Score = 28.7 bits (61), Expect = 0.71
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +1

Query: 13  CPKWI*YNTLYLGNFVYWLYIS 78
           C  W+ +NTL+  +F YW+ I+
Sbjct: 68  CTSWVIFNTLFGLSFTYWMAIA 89


>03_01_0099 +
           778521-778736,779521-779775,779831-779924,780064-780116,
           780301-780339,781091-781159,781275-781445,781533-781598,
           782533-782601,782993-783060,783308-783430,784095-784228,
           784412-784506,784600-784644,784755-784814,785548-785599,
           785674-785714,785857-785921,786704-786755,787021-787092
          Length = 612

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -2

Query: 82  THLYKASIQNYLNIMYCIKSIWDTRLV 2
           T L    +Q  L I+YC + I DTR V
Sbjct: 583 TKLQHVQLQEELKILYCHEEIIDTREV 609


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,289,775
Number of Sequences: 37544
Number of extensions: 19160
Number of successful extensions: 29
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 14,793,348
effective HSP length: 16
effective length of database: 14,192,644
effective search space used: 269660236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)