Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_O14
         (107 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    20   2.4  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    18   9.8  
AF393493-1|AAL60418.1|  142|Apis mellifera odorant binding prote...    18   9.8  
AF166497-1|AAD51945.1|  142|Apis mellifera putative odorant-bind...    18   9.8  

>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 20.2 bits (40), Expect = 2.4
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = +2

Query: 2   HEASVPNGFNTIHYI*VILY 61
           HE S+PN +  +++   +LY
Sbjct: 103 HEMSIPNHYLWLYHDKTLLY 122


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 18.2 bits (35), Expect = 9.8
 Identities = 6/21 (28%), Positives = 14/21 (66%)
 Frame = +1

Query: 40  LYLGNFVYWLYISELINKLKV 102
           LY+     W Y++ +I++L++
Sbjct: 463 LYIQTREDWKYVAMVIDRLQL 483


>AF393493-1|AAL60418.1|  142|Apis mellifera odorant binding protein
           ASP2 protein.
          Length = 142

 Score = 18.2 bits (35), Expect = 9.8
 Identities = 5/8 (62%), Positives = 8/8 (100%)
 Frame = -3

Query: 75  YIKPVYKI 52
           Y++PVYK+
Sbjct: 86  YVEPVYKM 93


>AF166497-1|AAD51945.1|  142|Apis mellifera putative odorant-binding
           protein ASP2 protein.
          Length = 142

 Score = 18.2 bits (35), Expect = 9.8
 Identities = 5/8 (62%), Positives = 8/8 (100%)
 Frame = -3

Query: 75  YIKPVYKI 52
           Y++PVYK+
Sbjct: 86  YVEPVYKM 93


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,604
Number of Sequences: 438
Number of extensions: 242
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 16
effective length of database: 139,335
effective search space used:  2647365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)