Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_O13
(363 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyc... 29 0.17
SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||M... 28 0.51
SPAC23C4.14 |alg1||mannosyltransferase complex subunit Alg1 |Sch... 28 0.51
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch... 26 2.1
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo... 25 3.6
SPCC550.05 |nse1||Smc5-6 complex non-SMC subunit 1|Schizosacchar... 25 4.8
SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces pombe... 25 4.8
SPAC806.02c |||Par A family ATPase iron cluster assembly protein... 24 8.3
SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr... 24 8.3
SPBC11C11.10 ||SPBC3B8.13c|pseudouridine synthase|Schizosaccharo... 24 8.3
SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces pom... 24 8.3
>SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 573
Score = 29.5 bits (63), Expect = 0.17
Identities = 12/38 (31%), Positives = 23/38 (60%)
Frame = +3
Query: 162 SLSAAAYGVLLTTLQIAMLSARDVGTEEDIAEALLMSI 275
SL +YG+L+ + + + + D+G +D+AE LL +
Sbjct: 508 SLDDMSYGLLVFQVNLMAIMSMDMGLSKDVAEDLLQDL 545
>SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1258
Score = 27.9 bits (59), Expect = 0.51
Identities = 15/41 (36%), Positives = 18/41 (43%)
Frame = +2
Query: 83 YSSLLLFVCITFLVIVSSPQNGALADKLIGSCVWGAVNYTS 205
Y SLLLF+C + P LA G VWG Y +
Sbjct: 1058 YHSLLLFLCSIAVFYYDGPNKDGLAS---GHWVWGTTLYAA 1095
>SPAC23C4.14 |alg1||mannosyltransferase complex subunit Alg1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 424
Score = 27.9 bits (59), Expect = 0.51
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +1
Query: 88 FIIAVCLHHIFGDRFISAKWRSSGQAYRQLRMG 186
F IA CLH + G +FI W + G + L++G
Sbjct: 135 FFIAQCLHILRGTKFI-IDWHNFGYSILALKLG 166
>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
Slh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1935
Score = 25.8 bits (54), Expect = 2.1
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = -2
Query: 161 CPLERHFAEMKRSPKM 114
CP+E+HF K SPK+
Sbjct: 489 CPIEQHFIGAKGSPKI 504
>SPAC23D3.13c |||guanyl-nucleotide exchange
factor|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1616
Score = 25.0 bits (52), Expect = 3.6
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +2
Query: 113 TFLVIVSSPQNGALADKLIGSCVWGAVNYTSDC 211
+FLV S+ + ALA +L+ C+ VN+ S C
Sbjct: 499 SFLVAYSTFVSSALAVELLKFCLNSYVNFVSVC 531
>SPCC550.05 |nse1||Smc5-6 complex non-SMC subunit
1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 232
Score = 24.6 bits (51), Expect = 4.8
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +3
Query: 180 YGVLLTTLQIAMLSARDVGTEEDIAEALL 266
Y LTTLQI LS +++G + E+ L
Sbjct: 115 YQYSLTTLQIQKLSRKEMGLAPSVIESHL 143
>SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 973
Score = 24.6 bits (51), Expect = 4.8
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = +2
Query: 41 VKDQVFTIIKMVKNYSSLLLFVCITFLVIVSS-PQNGALA 157
+K + +++ +KNYSS L F+ T V ++ P+N LA
Sbjct: 882 IKSKSQSLLSFLKNYSSDLPFLFNTSKVFINEIPENLKLA 921
>SPAC806.02c |||Par A family ATPase iron cluster assembly
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 608
Score = 23.8 bits (49), Expect = 8.3
Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 2/77 (2%)
Frame = +2
Query: 47 DQVFTIIKMVKNYSSLLLFVCITFLVIVSSPQNGALAD--KLIGSCVWGAVNYTSDCNAE 220
D+ TI++ + + +S + V I VIV++PQ A D K I C ++
Sbjct: 137 DEHLTIVESLLSETSTVRDVPIDGAVIVTTPQGIATLDVQKEIDFCKKASIKILGIVE-- 194
Query: 221 CKRRGYRGGHCGSFANV 271
GY HC N+
Sbjct: 195 -NMSGYICPHCADCTNI 210
>SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 877
Score = 23.8 bits (49), Expect = 8.3
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = +2
Query: 95 LLFVCITFLVIVSSPQNG 148
L+F+C F+ + SS +NG
Sbjct: 519 LIFICAVFVSVFSSIENG 536
>SPBC11C11.10 ||SPBC3B8.13c|pseudouridine
synthase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 407
Score = 23.8 bits (49), Expect = 8.3
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = -1
Query: 195 LTAPHTQLPISLSARAPFCGDETITKNVMQTNSNNEL*FFTIFM 64
+T +T P R F + ITK + N NE+ F+ +F+
Sbjct: 1 MTVTNTYNPTLFFTRVVF---QRITKFTAKANEENEILFYALFV 41
>SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 659
Score = 23.8 bits (49), Expect = 8.3
Identities = 12/30 (40%), Positives = 13/30 (43%)
Frame = -1
Query: 183 HTQLPISLSARAPFCGDETITKNVMQTNSN 94
HT P SLS R P D V NS+
Sbjct: 179 HTDSPTSLSHRLPNVPDTNALNTVQANNSS 208
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,463,680
Number of Sequences: 5004
Number of extensions: 26603
Number of successful extensions: 88
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 112046990
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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