Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_O13
         (363 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0538 + 3932581-3932632,3933014-3933219                           37   0.004
11_08_0028 + 27782072-27782171,27782427-27782620                       31   0.21 
11_08_0013 + 27629086-27629185,27629441-27629634                       31   0.21 
01_06_1225 - 35512211-35512240,35512762-35512850,35514162-355143...    30   0.49 
02_01_0540 + 3948833-3948911,3948979-3949208                           28   2.0  
07_03_0007 - 12271560-12272207                                         28   2.6  
11_06_0027 + 19363678-19363698,19364442-19364484,19366240-193662...    27   6.0  
10_02_0034 + 4408328-4408629,4409106-4409175                           27   6.0  
12_02_0768 - 22988119-22988223,22988337-22988558,22988645-229888...    26   7.9  

>02_01_0538 + 3932581-3932632,3933014-3933219
          Length = 85

 Score = 37.1 bits (82), Expect = 0.004
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = +2

Query: 200 TSDCNAECKRRGYRGGHCGSFANVNCWC 283
           TS+CN  C   GY GGHC +F    C C
Sbjct: 41  TSNCNTSCTNEGYTGGHCTTFRR-RCVC 67


>11_08_0028 + 27782072-27782171,27782427-27782620
          Length = 97

 Score = 31.5 bits (68), Expect = 0.21
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +2

Query: 209 CNAECKRRGYRGGHCGSFANVNCWCET*DVLLNTRYI 319
           C ++C+ +G+ GG C   +N +C C T +   N R++
Sbjct: 53  CMSDCQIKGFNGGLCDGESNDHCCC-TDEARTNNRFL 88


>11_08_0013 + 27629086-27629185,27629441-27629634
          Length = 97

 Score = 31.5 bits (68), Expect = 0.21
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +2

Query: 209 CNAECKRRGYRGGHCGSFANVNCWCET*DVLLNTRYI 319
           C ++C+ +G+ GG C   +N +C C T +   N R++
Sbjct: 53  CMSDCQIKGFNGGLCDGESNDHCCC-TDEARTNNRFL 88


>01_06_1225 -
           35512211-35512240,35512762-35512850,35514162-35514312,
           35514946-35515011,35515517-35515583,35516517-35516590
          Length = 158

 Score = 30.3 bits (65), Expect = 0.49
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = -1

Query: 306 FSKTSYVSHQQLTLAKLPQCPPLYPRLLHSALQSEV 199
           F+K  YV    L++     CP  YP  LHSA   EV
Sbjct: 69  FAKKIYVKLNFLSVVSDTTCPTQYPNTLHSAKSLEV 104


>02_01_0540 + 3948833-3948911,3948979-3949208
          Length = 102

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +2

Query: 185 GAVNYTSDCNAECKRRGYRGGHCGSFANVNCWC 283
           G   + ++C A C   GY GG+C +  +  C C
Sbjct: 44  GLCGHPTNCIACCTNEGYTGGYCTTVRH-KCMC 75


>07_03_0007 - 12271560-12272207
          Length = 215

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 18/43 (41%), Positives = 22/43 (51%)
 Frame = -1

Query: 258 LPQCPPLYPRLLHSALQSEV*LTAPHTQLPISLSARAPFCGDE 130
           +P  PPL PRLL S+        +P    P SLSAR  F  D+
Sbjct: 19  IPTLPPLLPRLLSSSFSHCPSSLSP--AKPPSLSARLSFVFDQ 59


>11_06_0027 +
           19363678-19363698,19364442-19364484,19366240-19366276,
           19366359-19366602,19366749-19366765,19366901-19366986,
           19367347-19367378,19367455-19367615,19367722-19367818,
           19367894-19368085,19368172-19368233,19368302-19368448,
           19368776-19369589
          Length = 650

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +2

Query: 233 GYRGGHCGSFANVNCWCET*D 295
           G  GGH  S+   NCW E  D
Sbjct: 288 GVIGGHYRSYVKTNCWYEVSD 308


>10_02_0034 + 4408328-4408629,4409106-4409175
          Length = 123

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = +2

Query: 221 CKRRGYRGGHCGSFANVNCWCE 286
           C RRG R G CG   N  C C+
Sbjct: 45  CLRRGIREGCCGVVKNHWCLCQ 66


>12_02_0768 -
           22988119-22988223,22988337-22988558,22988645-22988810,
           22989176-22989181,22989281-22989453,22989737-22989928,
           22990034-22990211,22990302-22990444,22990666-22990755,
           22990869-22990991,22991391-22991568,22992213-22992442,
           22992557-22992616,22992731-22992798,22992908-22992953
          Length = 659

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +3

Query: 204 QIAMLSARDVGTEEDIAEALLMSIVGAKHK 293
           ++A   A ++   ED+ +ALL+ +VGA H+
Sbjct: 336 KLARSLAPEIFGHEDVKKALLLLLVGAPHR 365


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,246,970
Number of Sequences: 37544
Number of extensions: 175558
Number of successful extensions: 415
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 411
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 415
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 566473892
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)