Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_O12
         (238 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha...    27   0.25 
SPCC1682.13 |||SWIRM domain protein|Schizosaccharomyces pombe|ch...    26   0.58 
SPAC637.07 |moe1||translation initiation factor eIF3d Moe1|Schiz...    26   0.76 
SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces ...    25   1.8  
SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces ...    25   1.8  
SPAP19A11.05c |mrp7||mitochondrial ribosomal protein subunit L27...    24   2.3  
SPAPB2B4.05 |vma5||V-type ATPase subunit C|Schizosaccharomyces p...    24   2.3  
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces...    23   5.4  
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    23   7.1  
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po...    23   7.1  
SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr...    23   7.1  
SPBC1703.08c |||5-formyltetrahydrofolate cyclo-ligase|Schizosacc...    22   9.4  
SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit R...    22   9.4  
SPCC1840.09 |||NAD dependent epimerase/dehydratase family protei...    22   9.4  
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p...    22   9.4  

>SPBC776.09 |ste13||ATP-dependent RNA helicase
           Ste13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 485

 Score = 27.5 bits (58), Expect = 0.25
 Identities = 17/55 (30%), Positives = 24/55 (43%)
 Frame = +2

Query: 74  YKLATSEVSSFRSEIKTRIASGNTGGPVRKNTNRGGGPNRNQNASNSGGMRGARR 238
           Y++     +S    +  + A G  G   R N NRGG P   +   N GG R + R
Sbjct: 423 YQIPRPLTASADQVLAAQQAKGQEGYHNRPNNNRGGHP---RGGGNRGGYRQSNR 474


>SPCC1682.13 |||SWIRM domain protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 272

 Score = 26.2 bits (55), Expect = 0.58
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 158 RKNTNRGGGPNRNQNASNSGGMRG 229
           R+N + G   NR+ N S+S G RG
Sbjct: 82  RRNNHVGRWANRHSNVSSSSGSRG 105


>SPAC637.07 |moe1||translation initiation factor eIF3d
           Moe1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 567

 Score = 25.8 bits (54), Expect = 0.76
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = +2

Query: 128 IASGNTGGPVRKNTNRGGGPNRNQNASNSGGMRGAR 235
           +  G  GG    +  RG G      +S +GG RG R
Sbjct: 125 VQRGGRGGRYGSSGGRGAGDTVVSRSSGAGGARGRR 160


>SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1098

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = -2

Query: 105 KLLTSEVANLYIHG 64
           KLLTS  +N YIHG
Sbjct: 444 KLLTSSTSNEYIHG 457


>SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 199

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +1

Query: 1   ARGADALKAMKQYNGVPLDG-RAMNIQI 81
           +R  DA +A +QY G  +DG R M ++I
Sbjct: 104 SRPGDATRAYEQYEGRLVDGTRKMKVEI 131


>SPAP19A11.05c |mrp7||mitochondrial ribosomal protein subunit
           L27|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 153

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +2

Query: 152 PVRKNTNRGGGPNRNQNASNSGGMRGARR 238
           P+R +T  GGG ++N    ++G   G +R
Sbjct: 33  PIRTSTKHGGGSSKN-TGDSAGRRLGIKR 60


>SPAPB2B4.05 |vma5||V-type ATPase subunit C|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 394

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +2

Query: 86  TSEVSSFRSEIKTRIASGNTGGPVRKNTNRGGGPNRNQNA 205
           TSE+ SF ++I+TR  S        +N  +    N +Q +
Sbjct: 131 TSEIISFENDIRTRQTSFQQASSAFQNMQKKQSGNLSQKS 170


>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 565

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +2

Query: 80  LATSEVSSFRSEIKTRIASGNTGGPVRKNTNR 175
           ++ S +S+  S +  + AS +  GPVR ++NR
Sbjct: 481 VSLSSLSNVNSSMPHKPASQSNVGPVRISSNR 512


>SPBC3E7.01 |fab1|ste12,
            SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
            Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +2

Query: 35   NIMECHSMGEP*IYKLATSEVSSFRS 112
            N ++C  + +P  ++  TSE+S FR+
Sbjct: 1133 NQIKCDWVTDPEKFESCTSEISKFRT 1158


>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 658

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = +2

Query: 131 ASGNTGGP-VRKNTNRGGGPNRNQNASNS 214
           +SGN+       N N+  G N NQN +N+
Sbjct: 604 SSGNSNKQNYNNNNNQNYGNNNNQNYNNN 632


>SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 537

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -1

Query: 169 GIFPNGASSVSTSNASFYFTPETTDF*SS*FVY 71
           G F + A +   S+    FTPET  F  S FV+
Sbjct: 189 GAFGSSALANVASSMCDIFTPETVGFGISLFVW 221


>SPBC1703.08c |||5-formyltetrahydrofolate
           cyclo-ligase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 204

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +3

Query: 144 LEAPLGKIPTEVVDQTEIKMLVIVVECEE 230
           L + LGK+   ++D   I +   VVE  E
Sbjct: 12  LNSSLGKLADHIIDSQSISICKQVVELPE 40


>SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit
           Rec11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 923

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = -1

Query: 139 STSNASFYFTPETTD 95
           S+ N S++F+PE T+
Sbjct: 871 SSGNPSYFFSPEDTE 885


>SPCC1840.09 |||NAD dependent epimerase/dehydratase family
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 276

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 6/16 (37%), Positives = 12/16 (75%)
 Frame = -3

Query: 53  SGTPLYCFIAFKASAP 6
           +  P+YC+++  A+AP
Sbjct: 148 ANVPVYCYVSAHAAAP 163


>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
           protein 1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 567

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -2

Query: 111 LLKLLTSEVANLYIHGSPIEW 49
           L  L  +E  NLYI   P+ W
Sbjct: 375 LQSLQDTESTNLYISNLPLHW 395


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 848,047
Number of Sequences: 5004
Number of extensions: 13636
Number of successful extensions: 40
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40
length of database: 2,362,478
effective HSP length: 58
effective length of database: 2,072,246
effective search space used: 41444920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)