Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_O12
(238 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC052302-1|AAH52302.1| 257|Homo sapiens THO complex 4 protein. 51 6e-07
AF047002-1|AAD09608.1| 233|Homo sapiens transcriptional coactiv... 49 2e-06
BC117210-1|AAI17211.1| 495|Homo sapiens Src homology 2 domain c... 30 1.5
AL162591-2|CAH72851.1| 495|Homo sapiens Src homology 2 domain c... 30 1.5
X65488-1|CAA46472.1| 806|Homo sapiens hnRNP U protein protein. 27 8.0
M99061-1|AAC83410.1| 645|Homo sapiens epidermal cytokeratin 2 p... 27 8.0
BX323046-7|CAI11058.1| 806|Homo sapiens heterogeneous nuclear r... 27 8.0
BX323046-6|CAI11057.1| 723|Homo sapiens heterogeneous nuclear r... 27 8.0
BX323046-4|CAI11055.1| 549|Homo sapiens heterogeneous nuclear r... 27 8.0
BC099644-1|AAH99644.1| 639|Homo sapiens keratin 2 (epidermal ic... 27 8.0
BC099643-1|AAH99643.1| 639|Homo sapiens keratin 2 (epidermal ic... 27 8.0
BC096294-1|AAH96294.1| 639|Homo sapiens keratin 2 (epidermal ic... 27 8.0
BC034925-1|AAH34925.1| 520|Homo sapiens Similar to heterogeneou... 27 8.0
BC024767-1|AAH24767.1| 806|Homo sapiens heterogeneous nuclear r... 27 8.0
BC015782-1|AAH15782.1| 722|Homo sapiens HNRPU protein protein. 27 8.0
BC007950-1|AAH07950.2| 705|Homo sapiens HNRPU protein protein. 27 8.0
BC003621-1|AAH03621.1| 806|Homo sapiens heterogeneous nuclear r... 27 8.0
BC003367-1|AAH03367.1| 806|Homo sapiens heterogeneous nuclear r... 27 8.0
AF068846-1|AAC19382.1| 824|Homo sapiens scaffold attachment fac... 27 8.0
AF019084-1|AAB81946.1| 645|Homo sapiens keratin 2e protein. 27 8.0
>BC052302-1|AAH52302.1| 257|Homo sapiens THO complex 4 protein.
Length = 257
Score = 51.2 bits (117), Expect = 6e-07
Identities = 23/26 (88%), Positives = 24/26 (92%)
Frame = +1
Query: 4 RGADALKAMKQYNGVPLDGRAMNIQI 81
R ADALKAMKQYNGVPLDGR MNIQ+
Sbjct: 155 RKADALKAMKQYNGVPLDGRPMNIQL 180
>AF047002-1|AAD09608.1| 233|Homo sapiens transcriptional
coactivator ALY protein.
Length = 233
Score = 49.2 bits (112), Expect = 2e-06
Identities = 22/26 (84%), Positives = 23/26 (88%)
Frame = +1
Query: 4 RGADALKAMKQYNGVPLDGRAMNIQI 81
R ADALKAMKQYNG PLDGR MNIQ+
Sbjct: 131 RKADALKAMKQYNGFPLDGRPMNIQL 156
Score = 27.5 bits (58), Expect = 8.0
Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = +2
Query: 134 SGNTGGP-VRKNTNRGGGPNRNQNASNSGGMRGARR 238
+G GG NRGGGP RN+ A G G R
Sbjct: 12 AGRRGGAQAAARVNRGGGPIRNRPAIARGAAGGGGR 47
>BC117210-1|AAI17211.1| 495|Homo sapiens Src homology 2 domain
containing E protein.
Length = 495
Score = 29.9 bits (64), Expect = 1.5
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = +2
Query: 116 IKTRIASGNTGGPVRKNTNRGG-GPNRNQNASNSGGMRGARR 238
+ R G GG +RKN+ GG GP + NS G+ R
Sbjct: 52 VSERAKPGGGGGKLRKNSEAGGAGPGPGKGRKNSAAELGSGR 93
>AL162591-2|CAH72851.1| 495|Homo sapiens Src homology 2 domain
containing E protein.
Length = 495
Score = 29.9 bits (64), Expect = 1.5
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = +2
Query: 116 IKTRIASGNTGGPVRKNTNRGG-GPNRNQNASNSGGMRGARR 238
+ R G GG +RKN+ GG GP + NS G+ R
Sbjct: 52 VSERAKPGGGGGKLRKNSEAGGAGPGPGKGRKNSAAELGSGR 93
>X65488-1|CAA46472.1| 806|Homo sapiens hnRNP U protein protein.
Length = 806
Score = 27.5 bits (58), Expect = 8.0
Identities = 15/27 (55%), Positives = 15/27 (55%), Gaps = 3/27 (11%)
Frame = +2
Query: 158 RKNTNRGGGPNR---NQNASNSGGMRG 229
R N NRGG PNR NQN G RG
Sbjct: 749 RGNYNRGGMPNRGNYNQNFRGRGNNRG 775
>M99061-1|AAC83410.1| 645|Homo sapiens epidermal cytokeratin 2
protein.
Length = 645
Score = 27.5 bits (58), Expect = 8.0
Identities = 16/65 (24%), Positives = 30/65 (46%)
Frame = +2
Query: 44 ECHSMGEP*IYKLATSEVSSFRSEIKTRIASGNTGGPVRKNTNRGGGPNRNQNASNSGGM 223
EC G+ + S+ S + ++ A G +GG + ++ GGG + ++ SGG
Sbjct: 494 ECRMSGDLSSNVTVSVTSSTISSNVASKAAFGGSGG---RGSSSGGGYSSGSSSYGSGGR 550
Query: 224 RGARR 238
+ R
Sbjct: 551 QSGSR 555
>BX323046-7|CAI11058.1| 806|Homo sapiens heterogeneous nuclear
ribonucleoprotein U (scaffold attachment factor A)
protein.
Length = 806
Score = 27.5 bits (58), Expect = 8.0
Identities = 15/27 (55%), Positives = 15/27 (55%), Gaps = 3/27 (11%)
Frame = +2
Query: 158 RKNTNRGGGPNR---NQNASNSGGMRG 229
R N NRGG PNR NQN G RG
Sbjct: 749 RGNYNRGGMPNRGNYNQNFRGRGNNRG 775
>BX323046-6|CAI11057.1| 723|Homo sapiens heterogeneous nuclear
ribonucleoprotein U (scaffold attachment factor A)
protein.
Length = 723
Score = 27.5 bits (58), Expect = 8.0
Identities = 15/27 (55%), Positives = 15/27 (55%), Gaps = 3/27 (11%)
Frame = +2
Query: 158 RKNTNRGGGPNR---NQNASNSGGMRG 229
R N NRGG PNR NQN G RG
Sbjct: 666 RGNYNRGGMPNRGNYNQNFRGRGNNRG 692
>BX323046-4|CAI11055.1| 549|Homo sapiens heterogeneous nuclear
ribonucleoprotein U (scaffold attachment factor A)
protein.
Length = 549
Score = 27.5 bits (58), Expect = 8.0
Identities = 15/27 (55%), Positives = 15/27 (55%), Gaps = 3/27 (11%)
Frame = +2
Query: 158 RKNTNRGGGPNR---NQNASNSGGMRG 229
R N NRGG PNR NQN G RG
Sbjct: 492 RGNYNRGGMPNRGNYNQNFRGRGNNRG 518
>BC099644-1|AAH99644.1| 639|Homo sapiens keratin 2 (epidermal
ichthyosis bullosa of Siemens) protein.
Length = 639
Score = 27.5 bits (58), Expect = 8.0
Identities = 16/65 (24%), Positives = 30/65 (46%)
Frame = +2
Query: 44 ECHSMGEP*IYKLATSEVSSFRSEIKTRIASGNTGGPVRKNTNRGGGPNRNQNASNSGGM 223
EC G+ + S+ S + ++ A G +GG + ++ GGG + ++ SGG
Sbjct: 488 ECRMSGDLSSNVTVSVTSSTISSNVASKAAFGGSGG---RGSSSGGGYSSGSSSYGSGGR 544
Query: 224 RGARR 238
+ R
Sbjct: 545 QSGSR 549
>BC099643-1|AAH99643.1| 639|Homo sapiens keratin 2 (epidermal
ichthyosis bullosa of Siemens) protein.
Length = 639
Score = 27.5 bits (58), Expect = 8.0
Identities = 16/65 (24%), Positives = 30/65 (46%)
Frame = +2
Query: 44 ECHSMGEP*IYKLATSEVSSFRSEIKTRIASGNTGGPVRKNTNRGGGPNRNQNASNSGGM 223
EC G+ + S+ S + ++ A G +GG + ++ GGG + ++ SGG
Sbjct: 488 ECRMSGDLSSNVTVSVTSSTISSNVASKAAFGGSGG---RGSSSGGGYSSGSSSYGSGGR 544
Query: 224 RGARR 238
+ R
Sbjct: 545 QSGSR 549
>BC096294-1|AAH96294.1| 639|Homo sapiens keratin 2 (epidermal
ichthyosis bullosa of Siemens) protein.
Length = 639
Score = 27.5 bits (58), Expect = 8.0
Identities = 16/65 (24%), Positives = 30/65 (46%)
Frame = +2
Query: 44 ECHSMGEP*IYKLATSEVSSFRSEIKTRIASGNTGGPVRKNTNRGGGPNRNQNASNSGGM 223
EC G+ + S+ S + ++ A G +GG + ++ GGG + ++ SGG
Sbjct: 488 ECRMSGDLSSNVTVSVTSSTISSNVASKAAFGGSGG---RGSSSGGGYSSGSSSYGSGGR 544
Query: 224 RGARR 238
+ R
Sbjct: 545 QSGSR 549
>BC034925-1|AAH34925.1| 520|Homo sapiens Similar to heterogeneous
nuclear ribonucleoprotein U (scaffold attachment facto
protein.
Length = 520
Score = 27.5 bits (58), Expect = 8.0
Identities = 15/27 (55%), Positives = 15/27 (55%), Gaps = 3/27 (11%)
Frame = +2
Query: 158 RKNTNRGGGPNR---NQNASNSGGMRG 229
R N NRGG PNR NQN G RG
Sbjct: 463 RGNYNRGGMPNRGNYNQNFRGRGNNRG 489
>BC024767-1|AAH24767.1| 806|Homo sapiens heterogeneous nuclear
ribonucleoprotein U (scaffold attachment factor A)
protein.
Length = 806
Score = 27.5 bits (58), Expect = 8.0
Identities = 15/27 (55%), Positives = 15/27 (55%), Gaps = 3/27 (11%)
Frame = +2
Query: 158 RKNTNRGGGPNR---NQNASNSGGMRG 229
R N NRGG PNR NQN G RG
Sbjct: 749 RGNYNRGGMPNRGNYNQNFRGRGNNRG 775
>BC015782-1|AAH15782.1| 722|Homo sapiens HNRPU protein protein.
Length = 722
Score = 27.5 bits (58), Expect = 8.0
Identities = 15/27 (55%), Positives = 15/27 (55%), Gaps = 3/27 (11%)
Frame = +2
Query: 158 RKNTNRGGGPNR---NQNASNSGGMRG 229
R N NRGG PNR NQN G RG
Sbjct: 665 RGNYNRGGMPNRGNYNQNFRGRGNNRG 691
>BC007950-1|AAH07950.2| 705|Homo sapiens HNRPU protein protein.
Length = 705
Score = 27.5 bits (58), Expect = 8.0
Identities = 15/27 (55%), Positives = 15/27 (55%), Gaps = 3/27 (11%)
Frame = +2
Query: 158 RKNTNRGGGPNR---NQNASNSGGMRG 229
R N NRGG PNR NQN G RG
Sbjct: 648 RGNYNRGGMPNRGNYNQNFRGRGNNRG 674
>BC003621-1|AAH03621.1| 806|Homo sapiens heterogeneous nuclear
ribonucleoprotein U (scaffold attachment factor A)
protein.
Length = 806
Score = 27.5 bits (58), Expect = 8.0
Identities = 15/27 (55%), Positives = 15/27 (55%), Gaps = 3/27 (11%)
Frame = +2
Query: 158 RKNTNRGGGPNR---NQNASNSGGMRG 229
R N NRGG PNR NQN G RG
Sbjct: 749 RGNYNRGGMPNRGNYNQNFRGRGNNRG 775
>BC003367-1|AAH03367.1| 806|Homo sapiens heterogeneous nuclear
ribonucleoprotein U (scaffold attachment factor A)
protein.
Length = 806
Score = 27.5 bits (58), Expect = 8.0
Identities = 15/27 (55%), Positives = 15/27 (55%), Gaps = 3/27 (11%)
Frame = +2
Query: 158 RKNTNRGGGPNR---NQNASNSGGMRG 229
R N NRGG PNR NQN G RG
Sbjct: 749 RGNYNRGGMPNRGNYNQNFRGRGNNRG 775
>AF068846-1|AAC19382.1| 824|Homo sapiens scaffold attachment factor
A protein.
Length = 824
Score = 27.5 bits (58), Expect = 8.0
Identities = 15/27 (55%), Positives = 15/27 (55%), Gaps = 3/27 (11%)
Frame = +2
Query: 158 RKNTNRGGGPNR---NQNASNSGGMRG 229
R N NRGG PNR NQN G RG
Sbjct: 767 RGNYNRGGMPNRGNYNQNFRGRGNNRG 793
>AF019084-1|AAB81946.1| 645|Homo sapiens keratin 2e protein.
Length = 645
Score = 27.5 bits (58), Expect = 8.0
Identities = 16/65 (24%), Positives = 30/65 (46%)
Frame = +2
Query: 44 ECHSMGEP*IYKLATSEVSSFRSEIKTRIASGNTGGPVRKNTNRGGGPNRNQNASNSGGM 223
EC G+ + S+ S + ++ A G +GG + ++ GGG + ++ SGG
Sbjct: 494 ECRMSGDLSSNVTVSVTSSTISSNVASKAAFGGSGG---RGSSSGGGYSSGSSSYGSGGR 550
Query: 224 RGARR 238
+ R
Sbjct: 551 QSGSR 555
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,720,887
Number of Sequences: 237096
Number of extensions: 449368
Number of successful extensions: 1220
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1209
length of database: 76,859,062
effective HSP length: 57
effective length of database: 63,344,590
effective search space used: 1330236390
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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