Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_O11
(409 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23C11.04c |pnk1||DNA kinase/phosphatase Pnk1|Schizosaccharom... 71 7e-14
SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate... 29 0.37
SPAPB8E5.03 |mae1||malic acid transport protein Mae1 |Schizosacc... 28 0.64
SPBC2D10.03c |||DUF866 domain protein|Schizosaccharomyces pombe|... 27 1.1
SPAC869.11 ||SPAC922.08c|amino acid permease, unknown 6|Schizosa... 27 1.5
SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyce... 26 2.0
SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cu... 26 2.6
SPBC359.03c |||amino acid permease, unknown 8|Schizosaccharomyce... 26 2.6
SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr 1|||... 25 3.4
SPBC359.01 ||SPBPB10D8.08|amino acid permease, unknown 7|Schizos... 25 3.4
SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD subfamily|Sch... 25 3.4
SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces ... 25 3.4
SPBC216.06c |swi1||replication fork protection complex subunit S... 25 4.5
SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomy... 25 6.0
SPAC1071.11 |||NADH-dependent flavin oxidoreductase |Schizosacch... 25 6.0
SPCC18.09c |||conserved eukaryotic protein|Schizosaccharomyces p... 24 7.9
SPAC6F12.05c |tnr3||thiamine diphosphokinase Tnr3 |Schizosacchar... 24 7.9
SPBC215.03c |csn1||COP9/signalosome complex subunit Csn1|Schizos... 24 7.9
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces... 24 7.9
SPCC553.12c ||SPCC794.13|conserved fungal protein|Schizosaccharo... 24 7.9
>SPAC23C11.04c |pnk1||DNA kinase/phosphatase
Pnk1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 421
Score = 70.9 bits (166), Expect = 7e-14
Identities = 44/130 (33%), Positives = 68/130 (52%), Gaps = 13/130 (10%)
Frame = +3
Query: 6 RDELGSWQKCAAEATTFLQQGKSVIV-------------DSTNPDMESRARWTSLARKMK 146
+D L + KC A L++ KSV++ D+TNP +ESR W +A++ +
Sbjct: 287 QDILKTKSKCIKAAIEALKKEKSVVIGMYSIISTTYAISDNTNPTIESRKMWIDIAQEFE 346
Query: 147 VECRCGKMCTSMSHAKHNNKFRQLMKTNHVPVNDIIFHTFKNKFTEPTTNEGCKEVIEVK 326
+ RC + +S A+HNN FR + N + +I F++FK++F PT EG V EV
Sbjct: 347 IPIRCIHLQSSEELARHNNVFRYI-HHNQKQLPEIAFNSFKSRFQMPTVEEGFTNVEEVP 405
Query: 327 FNPCFDNEET 356
F D E+T
Sbjct: 406 FKCLKDYEDT 415
>SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate
transferase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 453
Score = 28.7 bits (61), Expect = 0.37
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = -1
Query: 217 SCLNLL-LCLAWDMLVHILPHRHSTFIFRASEVHRARDSMSGFVLSTITL 71
SCL L+ LCL +D+ +H+L H S AS+ H + ++ F++ L
Sbjct: 380 SCLALMILCLYYDLHMHLLAHPIS---LSASQSHLTKQTVRQFLVKITEL 426
>SPAPB8E5.03 |mae1||malic acid transport protein Mae1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 438
Score = 27.9 bits (59), Expect = 0.64
Identities = 12/42 (28%), Positives = 27/42 (64%)
Frame = -1
Query: 289 VGSVNLFLKV*KMISLTGTWLVFISCLNLLLCLAWDMLVHIL 164
VG VN +++ KMI + + +F + ++LC+ W +L++++
Sbjct: 332 VGFVNCTIEIGKMID-SKAFQMFGHIIGVILCIQWILLMYLM 372
>SPBC2D10.03c |||DUF866 domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 157
Score = 27.1 bits (57), Expect = 1.1
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +3
Query: 303 CKEVIEVKFNPCFDNEETKKIYTM 374
C VIE F+P D++ETKK+ +
Sbjct: 75 CSFVIEGPFSPYNDSQETKKVLVL 98
>SPAC869.11 ||SPAC922.08c|amino acid permease, unknown
6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 580
Score = 26.6 bits (56), Expect = 1.5
Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = -1
Query: 403 ADFFYFSNKCIV*IFFVSSLSKQGLNLTSITSLHPSFVVGS-VNLFLKV 260
++FF + + C+ I F + KQG +L + + P + GS + LF +
Sbjct: 443 SNFFTWGSICLCHIIFRLAFKKQGHSLKELGFVSPMGIWGSCIGLFFNI 491
>SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 613
Score = 26.2 bits (55), Expect = 2.0
Identities = 23/83 (27%), Positives = 34/83 (40%), Gaps = 5/83 (6%)
Frame = +3
Query: 27 QKCAAEATTFLQQGKSV-IVDSTNPDMESRARWTSLARKMKVECRCGKMCTSMSHAKHNN 203
QK +A L + K + D + D+E R S + K S K +N
Sbjct: 530 QKAPLQAFLSLSEHKKTEVFDQDDTDLEPVPRLMSKVESIPAGASSDKSGKSSISKKSSN 589
Query: 204 KFRQLM-KTNH---VPVNDIIFH 260
F++L KTN+ ND+ FH
Sbjct: 590 SFKELSPKTNNDEDDEFNDLKFH 612
>SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cuf1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 411
Score = 25.8 bits (54), Expect = 2.6
Identities = 12/39 (30%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
Frame = +3
Query: 153 CRCGKMCTSMSHAKHNNKFRQLMKTNHVPV--NDIIFHT 263
C+CG C + H N L NH+ + I HT
Sbjct: 328 CQCGDNCECLGCLTHPNNATTLAALNHISALEKETISHT 366
>SPBC359.03c |||amino acid permease, unknown 8|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 579
Score = 25.8 bits (54), Expect = 2.6
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = -1
Query: 403 ADFFYFSNKCIV*IFFVSSLSKQGLNLTSITSLHPSFVVGSV 278
++FF + + C+ I F + KQG +L + + P + GSV
Sbjct: 443 SNFFTWGSICLSHIMFRLAFKKQGHSLKELGFVSPMGIWGSV 484
>SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr
1|||Manual
Length = 459
Score = 25.4 bits (53), Expect = 3.4
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = -1
Query: 400 DFFYFSNKCIV*IFFVSSLSKQGLNLTSITSLHPSFVV 287
+FF F C++ +F + SK G+ I S PSFV+
Sbjct: 55 EFFIF---CLIPLFVIYVSSKVGVFTLCIASFLPSFVL 89
>SPBC359.01 ||SPBPB10D8.08|amino acid permease, unknown
7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 581
Score = 25.4 bits (53), Expect = 3.4
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = -1
Query: 403 ADFFYFSNKCIV*IFFVSSLSKQGLNLTSITSLHPSFVVGSV 278
+ FF + + C+ I F + KQG +L + + P + GSV
Sbjct: 443 SSFFTWGSICLSHIMFRLAFKKQGHSLKELGFVSPMGIWGSV 484
>SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD
subfamily|Schizosaccharomyces pombe|chr 1|||Manual
Length = 887
Score = 25.4 bits (53), Expect = 3.4
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +3
Query: 216 LMKTNHVPVNDIIFHTFKNK 275
L++ NH+ D+I TF NK
Sbjct: 47 LLQKNHIAAEDLIIATFTNK 66
>SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 886
Score = 25.4 bits (53), Expect = 3.4
Identities = 10/22 (45%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Frame = -2
Query: 66 LAEGMWWLRRHISA-TNLIHPS 4
+ +G WW+ RHI+ T I PS
Sbjct: 38 IGDGKWWIGRHINTNTQGIFPS 59
>SPBC216.06c |swi1||replication fork protection complex subunit
Swi1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 971
Score = 25.0 bits (52), Expect = 4.5
Identities = 13/53 (24%), Positives = 24/53 (45%)
Frame = -1
Query: 232 WLVFISCLNLLLCLAWDMLVHILPHRHSTFIFRASEVHRARDSMSGFVLSTIT 74
W + ++C+ LL+ L W L H TF ++ R + S + S ++
Sbjct: 86 WRIALACVELLVPLTWP-----LETEHETFRENVDVLYNLRQAQSNYKNSILS 133
>SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 922
Score = 24.6 bits (51), Expect = 6.0
Identities = 9/14 (64%), Positives = 13/14 (92%)
Frame = -3
Query: 194 LSVGHAGTHFATST 153
L+VGH GT+FAT++
Sbjct: 483 LAVGHDGTYFATAS 496
>SPAC1071.11 |||NADH-dependent flavin oxidoreductase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 244
Score = 24.6 bits (51), Expect = 6.0
Identities = 11/39 (28%), Positives = 17/39 (43%)
Frame = +3
Query: 30 KCAAEATTFLQQGKSVIVDSTNPDMESRARWTSLARKMK 146
K + +QQ VIV + ++ + W SL K K
Sbjct: 89 KIPSRTANAIQQSNRVIVHLLSSSIKKHSEWASLLAKQK 127
>SPCC18.09c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 232
Score = 24.2 bits (50), Expect = 7.9
Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
Frame = +3
Query: 192 KHNNKFRQLMKTNHVPVNDIIFHTFKNKFTEPTTNEGCKEVIEVKFN--PCFDNEETKKI 365
KH + +L+ ++ +IF +N ++ TNE I+V F+ P +N +
Sbjct: 92 KHRSLVEKLVSYVQGDLSGLIFDEARNCLSQQLTNEALCNYIKVGFHAGPSMNNLHLHIM 151
Query: 366 YTMHLLEK*KKSA 404
H+ K SA
Sbjct: 152 TLDHVSPSLKNSA 164
>SPAC6F12.05c |tnr3||thiamine diphosphokinase Tnr3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 569
Score = 24.2 bits (50), Expect = 7.9
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = -3
Query: 77 NTFTLLKECGGFGGTFLPRT 18
N LL EC F G F+P T
Sbjct: 13 NAEELLDECDSFNGEFVPGT 32
>SPBC215.03c |csn1||COP9/signalosome complex subunit
Csn1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 422
Score = 24.2 bits (50), Expect = 7.9
Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Frame = +3
Query: 207 FRQL-MKTNHVPVNDIIFHTFKNKFTEPTTNEGCKEVIEVKFNPCFDNEE 353
FR L + N P+ H + E T N + + +F CF+NE+
Sbjct: 26 FRALFVARNSKPLRSFCVHYAIKELKEKTYNLELYQSLFEEFQDCFENEQ 75
>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1154
Score = 24.2 bits (50), Expect = 7.9
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +3
Query: 177 SMSHAKHNNKFRQLMKTNHVPVNDIIFHTFKNKFTEPTT 293
S S +K + +RQ T P+N H + K T PT+
Sbjct: 368 SRSISKTSRMYRQ---TAEEPLNSYSLHVYPQKITAPTS 403
>SPCC553.12c ||SPCC794.13|conserved fungal
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 521
Score = 24.2 bits (50), Expect = 7.9
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = -1
Query: 343 SKQGLNLTSITSLHPSFVVGSVNLFLKV*KMISLTGTWLVFISCL 209
SK G +T I S +VGS+ ++ + I+ T L+FIS +
Sbjct: 169 SKLGGTITYILFWMFSLLVGSLVVYFTAWRQITFTWITLMFISMI 213
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,770,799
Number of Sequences: 5004
Number of extensions: 34519
Number of successful extensions: 127
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 140222766
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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