Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_O11
(409 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0256 - 18841627-18841993,18842087-18842415,18842512-188427... 29 1.9
07_01_0548 - 4061829-4062956 28 3.3
01_05_0178 - 18971075-18971863,18971960-18972197,18972791-18973041 28 3.3
02_05_0994 - 33369971-33370759,33370856-33370956,33371092-333710... 27 4.3
02_05_0522 - 29744368-29745534 27 4.3
12_01_0638 - 5376164-5376247,5376734-5380517,5382029-5382045 27 5.7
01_06_1025 + 33904633-33904942,33905035-33905063 27 5.7
11_01_0705 - 5795976-5796051,5796450-5796518,5796632-5796780,579... 27 7.6
07_01_0809 - 6347986-6348048,6348460-6348571,6348956-6349041 27 7.6
>06_03_0256 -
18841627-18841993,18842087-18842415,18842512-18842749,
18844091-18844373,18844773-18844989,18845067-18845360
Length = 575
Score = 28.7 bits (61), Expect = 1.9
Identities = 20/71 (28%), Positives = 34/71 (47%)
Frame = +3
Query: 174 TSMSHAKHNNKFRQLMKTNHVPVNDIIFHTFKNKFTEPTTNEGCKEVIEVKFNPCFDNEE 353
T + A+ N K R+ K V ++D K K + N+G E++E + DN E
Sbjct: 464 TKTAKAQRNGKGRRKRKAK-VYLSDTDDEIDKLKEVQEMANKGRDELLETQRRVASDNLE 522
Query: 354 TKKIYTMHLLE 386
+KK+ + +E
Sbjct: 523 SKKLAHLAAME 533
>07_01_0548 - 4061829-4062956
Length = 375
Score = 27.9 bits (59), Expect = 3.3
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -1
Query: 115 ARDSMSGFVLSTITLLPC*RNVVASAAHFCHEPNSSL 5
AR+ ++G + I LP RN S +FC EP L
Sbjct: 292 ARNELAGHIPEGICALPRLRNFTYSYNYFCGEPERCL 328
>01_05_0178 - 18971075-18971863,18971960-18972197,18972791-18973041
Length = 425
Score = 27.9 bits (59), Expect = 3.3
Identities = 19/71 (26%), Positives = 35/71 (49%)
Frame = +3
Query: 174 TSMSHAKHNNKFRQLMKTNHVPVNDIIFHTFKNKFTEPTTNEGCKEVIEVKFNPCFDNEE 353
T + A+ N K ++ K V ++D K K + N+G E++E + + DN E
Sbjct: 314 TKTAKAQRNGKGKRKRKAK-VYLSDTDDEIDKLKEVQEMANKGRDELLETQRHVASDNLE 372
Query: 354 TKKIYTMHLLE 386
+KK+ + +E
Sbjct: 373 SKKLAHLAAME 383
>02_05_0994 -
33369971-33370759,33370856-33370956,33371092-33371093,
33373009-33373610
Length = 497
Score = 27.5 bits (58), Expect = 4.3
Identities = 19/71 (26%), Positives = 34/71 (47%)
Frame = +3
Query: 174 TSMSHAKHNNKFRQLMKTNHVPVNDIIFHTFKNKFTEPTTNEGCKEVIEVKFNPCFDNEE 353
T + A+ N K ++ K V ++D K K + N+G E++E + DN E
Sbjct: 386 TKTAKAQRNGKGKRKRKAK-VYLSDTDDEIDKLKEVQEMANKGRDELLETQRRVASDNLE 444
Query: 354 TKKIYTMHLLE 386
+KK+ + +E
Sbjct: 445 SKKLAHLAAME 455
>02_05_0522 - 29744368-29745534
Length = 388
Score = 27.5 bits (58), Expect = 4.3
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = -1
Query: 289 VGSVNLFLKV*KMISLTGTW-LVFISCLNLLLCLAWDMLVHILPHRH 152
VG V+ L + K+ S G W +V + + LL+ AW +L+ L H H
Sbjct: 238 VGVVSAGLALFKLSSAFGFWWVVRVYGVPLLIVNAWLVLITYLQHTH 284
>12_01_0638 - 5376164-5376247,5376734-5380517,5382029-5382045
Length = 1294
Score = 27.1 bits (57), Expect = 5.7
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +3
Query: 216 LMKTNHVPVNDIIFHTFKNKFTEPTTNEGCKEVIEVKF 329
LM TNH+P+ +I H K T C+E++ F
Sbjct: 233 LMSTNHIPILSLIGHGGMGKTT--LAQRVCEEMVRKNF 268
>01_06_1025 + 33904633-33904942,33905035-33905063
Length = 112
Score = 27.1 bits (57), Expect = 5.7
Identities = 10/46 (21%), Positives = 22/46 (47%)
Frame = +3
Query: 33 CAAEATTFLQQGKSVIVDSTNPDMESRARWTSLARKMKVECRCGKM 170
C+ + + + + +++ NP +E S+ +K V C C K+
Sbjct: 27 CSRDLQDLIMECQKYVMNPANPKIEPSNACCSVIQKANVPCLCSKV 72
>11_01_0705 -
5795976-5796051,5796450-5796518,5796632-5796780,
5796875-5797006,5797128-5797450,5798166-5798172,
5799126-5799180,5799685-5799740,5799862-5800029,
5800912-5801097,5801269-5801419,5801515-5801743,
5802277-5802532,5802793-5802894
Length = 652
Score = 26.6 bits (56), Expect = 7.6
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +3
Query: 192 KHNNKFRQLMKTNHVPVNDIIFHTFKNKFT 281
K NN+F LM NH + ++ + ++ K+T
Sbjct: 57 KFNNEFGNLMMANHTNIIRLVGYCYEIKYT 86
>07_01_0809 - 6347986-6348048,6348460-6348571,6348956-6349041
Length = 86
Score = 26.6 bits (56), Expect = 7.6
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = +3
Query: 147 VECRCGKMCTSMSHAKHNNKFRQL 218
++ RC KMC S + N KF L
Sbjct: 60 IQVRCRKMCCCCSRSSRNMKFESL 83
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,507,137
Number of Sequences: 37544
Number of extensions: 227281
Number of successful extensions: 606
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 601
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 606
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 718652880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -