Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_O11
(409 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC033822-1|AAH33822.1| 521|Homo sapiens polynucleotide kinase 3... 114 9e-26
BC002519-1|AAH02519.2| 482|Homo sapiens PNKP protein protein. 114 9e-26
AY133033-1|AAM82170.1| 521|Homo sapiens polynucleotide kinase 3... 114 9e-26
AF354258-1|AAK57340.1| 521|Homo sapiens polynucleotide kinase-3... 114 9e-26
AF126486-1|AAD51135.1| 521|Homo sapiens polynucleotide kinase-3... 114 9e-26
AF125807-1|AAD50639.1| 521|Homo sapiens DNA 5'-kinase/3'-phosph... 114 9e-26
AC018766-1|AAF44716.1| 456|Homo sapiens Polynucleotide kinase 3... 114 9e-26
BC060798-1|AAH60798.1| 514|Homo sapiens transmembrane protein 1... 31 1.5
BC030284-1|AAH30284.1| 410|Homo sapiens TMEM117 protein protein. 31 1.5
AK057287-1|BAB71411.1| 514|Homo sapiens protein ( Homo sapiens ... 31 1.5
BC151240-1|AAI51241.1| 1498|Homo sapiens SHROOM4 protein protein. 29 6.0
AB033028-1|BAA86516.1| 1502|Homo sapiens KIAA1202 protein protein. 29 6.0
AK096419-1|BAC04782.1| 520|Homo sapiens protein ( Homo sapiens ... 29 8.0
>BC033822-1|AAH33822.1| 521|Homo sapiens polynucleotide kinase
3'-phosphatase protein.
Length = 521
Score = 114 bits (275), Expect = 9e-26
Identities = 46/108 (42%), Positives = 70/108 (64%)
Frame = +3
Query: 6 RDELGSWQKCAAEATTFLQQGKSVIVDSTNPDMESRARWTSLARKMKVECRCGKMCTSMS 185
RD LGSWQ+C T L+QGK V +D+TNPD SRAR+ AR V CRC ++
Sbjct: 396 RDTLGSWQRCVTTCETALKQGKRVAIDNTNPDAASRARYVQCARAAGVPCRCFLFTATLE 455
Query: 186 HAKHNNKFRQLMKTNHVPVNDIIFHTFKNKFTEPTTNEGCKEVIEVKF 329
A+HNN+FR++ ++H+PV+D++ + ++ +F PT EG ++E+ F
Sbjct: 456 QARHNNRFREMTDSSHIPVSDMVMYGYRKQFEAPTLAEGFSAILEIPF 503
>BC002519-1|AAH02519.2| 482|Homo sapiens PNKP protein protein.
Length = 482
Score = 114 bits (275), Expect = 9e-26
Identities = 46/108 (42%), Positives = 70/108 (64%)
Frame = +3
Query: 6 RDELGSWQKCAAEATTFLQQGKSVIVDSTNPDMESRARWTSLARKMKVECRCGKMCTSMS 185
RD LGSWQ+C T L+QGK V +D+TNPD SRAR+ AR V CRC ++
Sbjct: 357 RDTLGSWQRCVTTCETALKQGKRVAIDNTNPDAASRARYVQCARAAGVPCRCFLFTATLE 416
Query: 186 HAKHNNKFRQLMKTNHVPVNDIIFHTFKNKFTEPTTNEGCKEVIEVKF 329
A+HNN+FR++ ++H+PV+D++ + ++ +F PT EG ++E+ F
Sbjct: 417 QARHNNRFREMTDSSHIPVSDMVMYGYRKQFEAPTLAEGFSAILEIPF 464
>AY133033-1|AAM82170.1| 521|Homo sapiens polynucleotide kinase
3'-phosphatase protein.
Length = 521
Score = 114 bits (275), Expect = 9e-26
Identities = 46/108 (42%), Positives = 70/108 (64%)
Frame = +3
Query: 6 RDELGSWQKCAAEATTFLQQGKSVIVDSTNPDMESRARWTSLARKMKVECRCGKMCTSMS 185
RD LGSWQ+C T L+QGK V +D+TNPD SRAR+ AR V CRC ++
Sbjct: 396 RDTLGSWQRCVTTCETALKQGKRVAIDNTNPDAASRARYVQCARAAGVPCRCFLFTATLE 455
Query: 186 HAKHNNKFRQLMKTNHVPVNDIIFHTFKNKFTEPTTNEGCKEVIEVKF 329
A+HNN+FR++ ++H+PV+D++ + ++ +F PT EG ++E+ F
Sbjct: 456 QARHNNRFREMTDSSHIPVSDMVMYGYRKQFEAPTLAEGFSAILEIPF 503
>AF354258-1|AAK57340.1| 521|Homo sapiens polynucleotide
kinase-3'-phosphatase protein.
Length = 521
Score = 114 bits (275), Expect = 9e-26
Identities = 46/108 (42%), Positives = 70/108 (64%)
Frame = +3
Query: 6 RDELGSWQKCAAEATTFLQQGKSVIVDSTNPDMESRARWTSLARKMKVECRCGKMCTSMS 185
RD LGSWQ+C T L+QGK V +D+TNPD SRAR+ AR V CRC ++
Sbjct: 396 RDTLGSWQRCVTTCETALKQGKRVAIDNTNPDAASRARYVQCARAAGVPCRCFLFTATLE 455
Query: 186 HAKHNNKFRQLMKTNHVPVNDIIFHTFKNKFTEPTTNEGCKEVIEVKF 329
A+HNN+FR++ ++H+PV+D++ + ++ +F PT EG ++E+ F
Sbjct: 456 QARHNNRFREMTDSSHIPVSDMVMYGYRKQFEAPTLAEGFSAILEIPF 503
>AF126486-1|AAD51135.1| 521|Homo sapiens polynucleotide
kinase-3'-phosphatase protein.
Length = 521
Score = 114 bits (275), Expect = 9e-26
Identities = 46/108 (42%), Positives = 70/108 (64%)
Frame = +3
Query: 6 RDELGSWQKCAAEATTFLQQGKSVIVDSTNPDMESRARWTSLARKMKVECRCGKMCTSMS 185
RD LGSWQ+C T L+QGK V +D+TNPD SRAR+ AR V CRC ++
Sbjct: 396 RDTLGSWQRCVTTCETALKQGKRVAIDNTNPDAASRARYVQCARAAGVPCRCFLFTATLE 455
Query: 186 HAKHNNKFRQLMKTNHVPVNDIIFHTFKNKFTEPTTNEGCKEVIEVKF 329
A+HNN+FR++ ++H+PV+D++ + ++ +F PT EG ++E+ F
Sbjct: 456 QARHNNRFREMTDSSHIPVSDMVMYGYRKQFEAPTLAEGFSAILEIPF 503
>AF125807-1|AAD50639.1| 521|Homo sapiens DNA
5'-kinase/3'-phosphatase protein.
Length = 521
Score = 114 bits (275), Expect = 9e-26
Identities = 46/108 (42%), Positives = 70/108 (64%)
Frame = +3
Query: 6 RDELGSWQKCAAEATTFLQQGKSVIVDSTNPDMESRARWTSLARKMKVECRCGKMCTSMS 185
RD LGSWQ+C T L+QGK V +D+TNPD SRAR+ AR V CRC ++
Sbjct: 396 RDTLGSWQRCVTTCETALKQGKRVAIDNTNPDAASRARYVQCARAAGVPCRCFLFTATLE 455
Query: 186 HAKHNNKFRQLMKTNHVPVNDIIFHTFKNKFTEPTTNEGCKEVIEVKF 329
A+HNN+FR++ ++H+PV+D++ + ++ +F PT EG ++E+ F
Sbjct: 456 QARHNNRFREMTDSSHIPVSDMVMYGYRKQFEAPTLAEGFSAILEIPF 503
>AC018766-1|AAF44716.1| 456|Homo sapiens Polynucleotide kinase
3'-phosphatase, partial sequence protein.
Length = 456
Score = 114 bits (275), Expect = 9e-26
Identities = 46/108 (42%), Positives = 70/108 (64%)
Frame = +3
Query: 6 RDELGSWQKCAAEATTFLQQGKSVIVDSTNPDMESRARWTSLARKMKVECRCGKMCTSMS 185
RD LGSWQ+C T L+QGK V +D+TNPD SRAR+ AR V CRC ++
Sbjct: 331 RDTLGSWQRCVTTCETALKQGKRVAIDNTNPDAASRARYVQCARAAGVPCRCFLFTATLE 390
Query: 186 HAKHNNKFRQLMKTNHVPVNDIIFHTFKNKFTEPTTNEGCKEVIEVKF 329
A+HNN+FR++ ++H+PV+D++ + ++ +F PT EG ++E+ F
Sbjct: 391 QARHNNRFREMTDSSHIPVSDMVMYGYRKQFEAPTLAEGFSAILEIPF 438
>BC060798-1|AAH60798.1| 514|Homo sapiens transmembrane protein 117
protein.
Length = 514
Score = 31.1 bits (67), Expect = 1.5
Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 2/80 (2%)
Frame = -1
Query: 331 LNLTSITSLHPSFVVGSVNLFLKV*KMISLTGTWLVF-ISCLNLLLCL-AWDMLVHILPH 158
+NL + + H F + K I +TG W + I L L+L L W + PH
Sbjct: 269 VNLPGLHTPHMQFKIPFFQKIFKEEYRIHITGKWFNYGIIFLVLILDLNMWKNQIFYKPH 328
Query: 157 RHSTFIFRASEVHRARDSMS 98
+ +I +++ +DS S
Sbjct: 329 EYGQYIGPGQKIYTVKDSES 348
>BC030284-1|AAH30284.1| 410|Homo sapiens TMEM117 protein protein.
Length = 410
Score = 31.1 bits (67), Expect = 1.5
Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 2/80 (2%)
Frame = -1
Query: 331 LNLTSITSLHPSFVVGSVNLFLKV*KMISLTGTWLVF-ISCLNLLLCL-AWDMLVHILPH 158
+NL + + H F + K I +TG W + I L L+L L W + PH
Sbjct: 165 VNLPGLHTPHMQFKIPFFQKIFKEEYRIHITGKWFNYGIIFLVLILDLNMWKNQIFYKPH 224
Query: 157 RHSTFIFRASEVHRARDSMS 98
+ +I +++ +DS S
Sbjct: 225 EYGQYIGPGQKIYTVKDSES 244
>AK057287-1|BAB71411.1| 514|Homo sapiens protein ( Homo sapiens
cDNA FLJ32725 fis, clone TESTI2000970. ).
Length = 514
Score = 31.1 bits (67), Expect = 1.5
Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 2/80 (2%)
Frame = -1
Query: 331 LNLTSITSLHPSFVVGSVNLFLKV*KMISLTGTWLVF-ISCLNLLLCL-AWDMLVHILPH 158
+NL + + H F + K I +TG W + I L L+L L W + PH
Sbjct: 269 VNLPGLHTPHMQFKIPFFQKIFKEEYRIHITGKWFNYGIIFLVLILDLNMWKNQIFYKPH 328
Query: 157 RHSTFIFRASEVHRARDSMS 98
+ +I +++ +DS S
Sbjct: 329 EYGQYIGPGQKIYTVKDSES 348
>BC151240-1|AAI51241.1| 1498|Homo sapiens SHROOM4 protein protein.
Length = 1498
Score = 29.1 bits (62), Expect = 6.0
Identities = 23/59 (38%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
Frame = +1
Query: 19 VRGRNVPPKPPHSFSKVKVL*WIVRILTWSH---ELGGLRWHGK*RWSVDVAKCVPACP 186
VR RN P PHS+ K+L T H E L WH S DV CV CP
Sbjct: 88 VRRRNAPVSRPHSWHVAKLLEGCPEAATTMHFPSEAFSLSWHSGCNTS-DV--CVQWCP 143
>AB033028-1|BAA86516.1| 1502|Homo sapiens KIAA1202 protein protein.
Length = 1502
Score = 29.1 bits (62), Expect = 6.0
Identities = 23/59 (38%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
Frame = +1
Query: 19 VRGRNVPPKPPHSFSKVKVL*WIVRILTWSH---ELGGLRWHGK*RWSVDVAKCVPACP 186
VR RN P PHS+ K+L T H E L WH S DV CV CP
Sbjct: 92 VRRRNAPVSRPHSWHVAKLLEGCPEAATTMHFPSEAFSLSWHSGCNTS-DV--CVQWCP 147
>AK096419-1|BAC04782.1| 520|Homo sapiens protein ( Homo sapiens
cDNA FLJ39100 fis, clone NTONG2001587, moderately
similar to KERATIN, TYPE II CYTOSKELETAL 4. ).
Length = 520
Score = 28.7 bits (61), Expect = 8.0
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +3
Query: 9 DELGSWQKCAAEATTFLQQGKSVIVDSTNPDMESRARWTSLARKMKVE 152
+ELG Q A++ + L + +D ++ E RAR+ +AR K E
Sbjct: 252 EELGQLQAQASDTSVVLSMDNNRYLDFSSIITEVRARYEEIARSSKAE 299
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 63,439,906
Number of Sequences: 237096
Number of extensions: 1295431
Number of successful extensions: 2819
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 2730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2819
length of database: 76,859,062
effective HSP length: 82
effective length of database: 57,417,190
effective search space used: 3043111070
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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