Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_O11
(409 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z54271-5|CAA91035.2| 407|Caenorhabditis elegans Hypothetical pr... 130 4e-31
AF292046-1|AAG41142.1| 407|Caenorhabditis elegans polynucleotid... 130 4e-31
L11247-1|AAA28010.2| 484|Caenorhabditis elegans Hypothetical pr... 28 3.0
Z11505-9|CAA77580.2| 515|Caenorhabditis elegans Hypothetical pr... 27 3.9
U64837-2|AAB04836.3| 213|Caenorhabditis elegans Hypothetical pr... 27 6.9
U49830-10|AAL16312.1| 463|Caenorhabditis elegans Hypothetical p... 27 6.9
AF022985-8|AAB69966.1| 354|Caenorhabditis elegans Hypothetical ... 26 9.1
AF016657-11|AAB93655.1| 282|Caenorhabditis elegans Hypothetical... 26 9.1
>Z54271-5|CAA91035.2| 407|Caenorhabditis elegans Hypothetical
protein F21D5.5 protein.
Length = 407
Score = 130 bits (314), Expect = 4e-31
Identities = 54/127 (42%), Positives = 86/127 (67%)
Frame = +3
Query: 6 RDELGSWQKCAAEATTFLQQGKSVIVDSTNPDMESRARWTSLARKMKVECRCGKMCTSMS 185
RD +G+WQKC A ++L GKSV++D+T+PD+ESR R+ +A+++ V RC +M SM
Sbjct: 281 RDTIGTWQKCVAATRSYLADGKSVVIDNTSPDLESRKRYIDVAKELGVPIRCFEMNCSME 340
Query: 186 HAKHNNKFRQLMKTNHVPVNDIIFHTFKNKFTEPTTNEGCKEVIEVKFNPCFDNEETKKI 365
HA+HN +FR L N ++ ++ K K+ EPT +EG ++++V F P F+ EE +K+
Sbjct: 341 HAQHNIRFRVLTDDNAAEISSMVLRIHKGKYVEPTLSEGFSQIVKVNFRPKFEVEEHEKL 400
Query: 366 YTMHLLE 386
Y M+L+E
Sbjct: 401 YKMYLIE 407
>AF292046-1|AAG41142.1| 407|Caenorhabditis elegans polynucleotide
kinase 3' phosphataseprotein.
Length = 407
Score = 130 bits (314), Expect = 4e-31
Identities = 54/127 (42%), Positives = 86/127 (67%)
Frame = +3
Query: 6 RDELGSWQKCAAEATTFLQQGKSVIVDSTNPDMESRARWTSLARKMKVECRCGKMCTSMS 185
RD +G+WQKC A ++L GKSV++D+T+PD+ESR R+ +A+++ V RC +M SM
Sbjct: 281 RDTIGTWQKCVAATRSYLADGKSVVIDNTSPDLESRKRYIDVAKELGVPIRCFEMNCSME 340
Query: 186 HAKHNNKFRQLMKTNHVPVNDIIFHTFKNKFTEPTTNEGCKEVIEVKFNPCFDNEETKKI 365
HA+HN +FR L N ++ ++ K K+ EPT +EG ++++V F P F+ EE +K+
Sbjct: 341 HAQHNIRFRVLTDDNAAEISSMVLRIHKGKYVEPTLSEGFSQIVKVNFRPKFEVEEHEKL 400
Query: 366 YTMHLLE 386
Y M+L+E
Sbjct: 401 YKMYLIE 407
>L11247-1|AAA28010.2| 484|Caenorhabditis elegans Hypothetical
protein F09G8.5 protein.
Length = 484
Score = 27.9 bits (59), Expect = 3.0
Identities = 17/57 (29%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Frame = -1
Query: 229 LVFISCLNLLLCLAW-DMLVHILPHRHSTFIFR-ASEVHRARDSMSGFVLSTITLLP 65
L+F+SCL++L+ +A+ +L+ ++ H S F+ S +H S + F ++ L+P
Sbjct: 5 LLFLSCLSMLVSIAFQSVLLPLILHLFSFFLLSFLSFLHFRSFSANNFKHHSLFLVP 61
>Z11505-9|CAA77580.2| 515|Caenorhabditis elegans Hypothetical
protein F59B2.13 protein.
Length = 515
Score = 27.5 bits (58), Expect = 3.9
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -1
Query: 241 TGTWLVFISCLNLLLCLAWDMLV 173
T TWLVF+ CL L+ + + + V
Sbjct: 208 TATWLVFVICLERLIIIKYPLSV 230
>U64837-2|AAB04836.3| 213|Caenorhabditis elegans Hypothetical
protein T27E4.5 protein.
Length = 213
Score = 26.6 bits (56), Expect = 6.9
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +3
Query: 150 ECRCGKMCTSMSHAKHNNKFRQLMKTNHVP 239
+CR C+S ++N+K R M+ NH P
Sbjct: 107 QCRMDITCSSGYSCENNSKTRCCMEANHSP 136
>U49830-10|AAL16312.1| 463|Caenorhabditis elegans Hypothetical
protein C33F10.8 protein.
Length = 463
Score = 26.6 bits (56), Expect = 6.9
Identities = 19/69 (27%), Positives = 28/69 (40%), Gaps = 1/69 (1%)
Frame = +3
Query: 174 TSMSHAKHNNKFRQLMKTNHVPVNDI-IFHTFKNKFTEPTTNEGCKEVIEVKFNPCFDNE 350
TS S A + N + N+ F + T+P T GCKE + + DNE
Sbjct: 246 TSSSSASNPNVYPMYYPNKPETFNNFGQFFVYCKTVTQPKTKYGCKE-YKFELVVQADNE 304
Query: 351 ETKKIYTMH 377
E + + H
Sbjct: 305 ERRSVRLYH 313
>AF022985-8|AAB69966.1| 354|Caenorhabditis elegans Hypothetical
protein T15B7.13 protein.
Length = 354
Score = 26.2 bits (55), Expect = 9.1
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = -1
Query: 391 YFSNKCIV*IFFVSSLSKQGLNLTSITSLHPSFVVGSVNLFLKV*KMIS 245
+F N + + L G+NLT I +F ++NLF K+ K++S
Sbjct: 83 FFCNISFIVVLSQKELRTSGINLTMIMIALCNFSSVTLNLFDKMLKLLS 131
>AF016657-11|AAB93655.1| 282|Caenorhabditis elegans Hypothetical
protein C16C4.10 protein.
Length = 282
Score = 26.2 bits (55), Expect = 9.1
Identities = 8/23 (34%), Positives = 18/23 (78%)
Frame = +3
Query: 309 EVIEVKFNPCFDNEETKKIYTMH 377
++I++ ++PC +N E +KI+ +H
Sbjct: 125 KIIKITYSPCIEN-ENQKIFLLH 146
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,902,950
Number of Sequences: 27780
Number of extensions: 197273
Number of successful extensions: 581
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 567
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 581
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 651753158
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -