Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_O11
         (409 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    23   1.3  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          22   3.1  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      22   3.1  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   5.4  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   7.1  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    20   9.4  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    20   9.4  

>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 23.0 bits (47), Expect = 1.3
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -1

Query: 235 TWLVFISCLNLLLCLAWDMLVHI 167
           TWL FI  + ++L  A  +L+HI
Sbjct: 50  TWLSFIRIVLVILLRAGYVLIHI 72


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 3.1
 Identities = 8/37 (21%), Positives = 22/37 (59%)
 Frame = -1

Query: 409 IKADFFYFSNKCIV*IFFVSSLSKQGLNLTSITSLHP 299
           I+ +F++F +K ++  +++  LS     ++ ++  HP
Sbjct: 253 IRGEFYFFLHKQVLNRYYLERLSNDMGEVSYVSLDHP 289


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 3.1
 Identities = 8/37 (21%), Positives = 22/37 (59%)
 Frame = -1

Query: 409 IKADFFYFSNKCIV*IFFVSSLSKQGLNLTSITSLHP 299
           I+ +F++F +K ++  +++  LS     ++ ++  HP
Sbjct: 253 IRGEFYFFLHKQVLNRYYLERLSNDMGEVSYVSLDHP 289


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.0 bits (42), Expect = 5.4
 Identities = 7/18 (38%), Positives = 14/18 (77%)
 Frame = -3

Query: 251 DIVDGYVVSLH*LPELVV 198
           D+V  +V+++H +PE+ V
Sbjct: 389 DVVQTHVLTIHTIPEVKV 406


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 20.6 bits (41), Expect = 7.1
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +3

Query: 30  KCAAEATTFLQQGKSVI 80
           KC   + TF+Q G+ VI
Sbjct: 177 KCTVCSKTFIQSGQLVI 193


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -1

Query: 247 SLTGTWLVFISCLNLLLCLA 188
           SLT  WL  +S ++   C A
Sbjct: 349 SLTDMWLTMLSMISGATCYA 368


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -1

Query: 247 SLTGTWLVFISCLNLLLCLA 188
           SLT  WL  +S ++   C A
Sbjct: 317 SLTDMWLTMLSMISGATCYA 336


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,647
Number of Sequences: 438
Number of extensions: 2260
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10256061
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)