Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_O10
         (299 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces...    31   0.036
SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom...    31   0.048
SPAC144.02 |||transcription factor |Schizosaccharomyces pombe|ch...    26   1.0  
SPBC27B12.11c |||transcription factor |Schizosaccharomyces pombe...    24   5.5  

>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 897

 Score = 31.1 bits (67), Expect = 0.036
 Identities = 15/32 (46%), Positives = 18/32 (56%)
 Frame = +3

Query: 18  ARGCPHCPRAFADCSNLNKHKKQVHKQVSLLS 113
           A  C  C RAFA    LN+H +Q+H Q   LS
Sbjct: 55  AFSCSFCNRAFARSDVLNRHVQQMHLQKQNLS 86


>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 781

 Score = 30.7 bits (66), Expect = 0.048
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +3

Query: 27  CPHCPRAFADCSNLNKHKKQVHKQVSLLSNESQPE 131
           CPHC  +F     LN+H  Q H + +   +++ P+
Sbjct: 49  CPHCSSSFTRSDVLNRHVNQKHVKQNDAGSQTHPK 83


>SPAC144.02 |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 249

 Score = 26.2 bits (55), Expect = 1.0
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +3

Query: 30  PHCPRAFADCSNLNKHKKQVHKQVSLLSNESQPE 131
           P C R+F     L KH + VH+  +L  ++  P+
Sbjct: 111 PECDRSFTRSDALAKHMRTVHEADTLRPSDPIPK 144


>SPBC27B12.11c |||transcription factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 738

 Score = 23.8 bits (49), Expect = 5.5
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +3

Query: 12  NSARGCPHCPRAFADCSNLNKHKK 83
           + AR C  C +A  DC +L + K+
Sbjct: 303 DDARPCQRCIKAKTDCIDLPRKKR 326


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 488,472
Number of Sequences: 5004
Number of extensions: 3895
Number of successful extensions: 17
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 73700136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)