Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_O10
         (299 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0160 + 1081416-1081647,1081840-1082012,1082169-1082246,108...    27   2.1  
07_01_1105 - 10173039-10173156,10173715-10173716,10174550-101745...    27   2.7  
02_05_0390 + 28557722-28557937,28558440-28558514,28558597-285587...    26   6.3  
02_05_0202 + 26708049-26709074                                         26   6.3  
02_01_0113 - 854108-854302,854399-854542,854658-854893,855036-85...    25   8.3  

>05_01_0160 +
           1081416-1081647,1081840-1082012,1082169-1082246,
           1082372-1082529,1082558-1082709,1083232-1083290,
           1083633-1083912,1084235-1084470,1084601-1084744,
           1084845-1085012
          Length = 559

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +3

Query: 36  CPRAFADCSNLNKHKKQVHKQ 98
           C  +F+  SNL+KH K VH+Q
Sbjct: 450 CKLSFSKKSNLDKHVKAVHEQ 470


>07_01_1105 -
           10173039-10173156,10173715-10173716,10174550-10174584,
           10174696-10174765,10175163-10176707,10176770-10178062
          Length = 1020

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +3

Query: 60  SNLNKHKKQVHKQVSLLSNESQPE 131
           SNLN+  K   + +S+++NES PE
Sbjct: 524 SNLNRADKTSARHLSIVNNESHPE 547


>02_05_0390 +
           28557722-28557937,28558440-28558514,28558597-28558766,
           28559046-28559124,28559320-28559516,28560300-28560387,
           28560453-28560679,28560763-28560919,28561467-28561517
          Length = 419

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +3

Query: 6   AVNSARGCPHCPRAFADCSNLNK 74
           A+ S++ CPHC  A +     NK
Sbjct: 304 ALRSSKQCPHCKMAISKIEGCNK 326


>02_05_0202 + 26708049-26709074
          Length = 341

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +3

Query: 27  CPHCPRAFADCSNLNKHKK 83
           CP+C R FA    L  HKK
Sbjct: 264 CPYCYRVFASGQALGGHKK 282


>02_01_0113 -
           854108-854302,854399-854542,854658-854893,855036-855315,
           856891-857031,857259-857372
          Length = 369

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +3

Query: 36  CPRAFADCSNLNKHKKQVHKQV 101
           C  +F++ SNL KH K  H QV
Sbjct: 251 CECSFSNKSNLTKHIKASHDQV 272


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,829,787
Number of Sequences: 37544
Number of extensions: 34448
Number of successful extensions: 112
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 339576272
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)