Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_O10
(299 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal elemen... 33 0.029
U41039-4|AAL11489.1| 452|Caenorhabditis elegans Synapse defecti... 31 0.20
AC025721-2|AAK29901.3| 976|Caenorhabditis elegans Hypothetical ... 30 0.27
Z66515-3|CAA91352.1| 322|Caenorhabditis elegans Hypothetical pr... 29 0.47
Z66515-2|CAA91353.1| 543|Caenorhabditis elegans Hypothetical pr... 29 0.47
S66936-1|AAB28820.1| 360|Caenorhabditis elegans Egl-43 protein. 29 0.47
S66757-1|AAB28819.1| 581|Caenorhabditis elegans Egl-43 protein. 29 0.47
AC024826-17|AAF60789.1| 662|Caenorhabditis elegans Hypothetical... 29 0.47
Z79755-8|CAB02113.1| 270|Caenorhabditis elegans Hypothetical pr... 28 1.1
U41039-3|AAK68627.2| 537|Caenorhabditis elegans Synapse defecti... 28 1.1
AF169201-1|AAF01678.1| 270|Caenorhabditis elegans CES-1 protein. 28 1.1
M93256-1|AAB59181.1| 1110|Caenorhabditis elegans tra-1 protein. 28 1.4
AL117202-5|CAB61040.2| 1109|Caenorhabditis elegans Hypothetical ... 28 1.4
AF045645-3|AAC02610.2| 193|Caenorhabditis elegans Hypothetical ... 28 1.4
Z81529-12|CAB04303.1| 492|Caenorhabditis elegans Hypothetical p... 27 1.9
U40959-2|AAA81766.1| 413|Caenorhabditis elegans Hypothetical pr... 27 1.9
AL161712-9|CAC70134.1| 343|Caenorhabditis elegans Hypothetical ... 27 1.9
AL023816-5|CAA19434.1| 492|Caenorhabditis elegans Hypothetical ... 27 1.9
AF039710-10|AAB96693.2| 393|Caenorhabditis elegans Hypothetical... 27 2.5
Z79603-2|CAB01893.4| 500|Caenorhabditis elegans Hypothetical pr... 27 3.3
U23454-9|AAC46522.2| 249|Caenorhabditis elegans Hypothetical pr... 27 3.3
Z81466-5|CAE45043.1| 1309|Caenorhabditis elegans Hypothetical pr... 26 4.4
Z81466-4|CAB03868.2| 1311|Caenorhabditis elegans Hypothetical pr... 26 4.4
AL132949-5|CAB61074.1| 144|Caenorhabditis elegans Hypothetical ... 26 4.4
Z81556-2|CAB04525.2| 445|Caenorhabditis elegans Hypothetical pr... 26 5.8
AC006625-13|ABI18147.1| 273|Caenorhabditis elegans Abnormal che... 26 5.8
AC006625-12|AAK68272.2| 214|Caenorhabditis elegans Abnormal che... 26 5.8
Z36752-3|CAA85325.1| 422|Caenorhabditis elegans Hypothetical pr... 25 7.6
U41542-13|ABO16442.1| 390|Caenorhabditis elegans Hsn abnormal m... 25 7.6
U41542-12|ABO16443.1| 392|Caenorhabditis elegans Hsn abnormal m... 25 7.6
L16559-6|AAA27931.1| 397|Caenorhabditis elegans Hypothetical pr... 25 7.6
AF101305-8|AAF98599.1| 534|Caenorhabditis elegans Hypothetical ... 25 7.6
>AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal element on
autosome protein2 protein.
Length = 1758
Score = 33.5 bits (73), Expect = 0.029
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = +3
Query: 27 CPHCPRAFADCSNLNKHKKQVHKQV--SLLSNESQP 128
CP C + +A N+ +H+ VHK +L+N QP
Sbjct: 1146 CPECKKTYASRKNVKRHRMAVHKLTLDEILANPEQP 1181
Score = 27.1 bits (57), Expect = 2.5
Identities = 11/32 (34%), Positives = 14/32 (43%)
Frame = +3
Query: 27 CPHCPRAFADCSNLNKHKKQVHKQVSLLSNES 122
C HC R SNL +H+ S SN +
Sbjct: 728 CEHCARQLCSMSNLKRHRATCKVAASSSSNSA 759
Score = 25.8 bits (54), Expect = 5.8
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = +3
Query: 27 CPHCPRAFADCSNLNKHKK 83
CP+C R A+ NL +H++
Sbjct: 319 CPNCNRNLANARNLQRHRQ 337
>U41039-4|AAL11489.1| 452|Caenorhabditis elegans Synapse defective
protein 9, isoformd protein.
Length = 452
Score = 30.7 bits (66), Expect = 0.20
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +3
Query: 27 CPHCPRAFADCSNLNKHKKQVHKQVSLL 110
CP CP++F+ L +H++ H S+L
Sbjct: 22 CPQCPKSFSSTKLLQQHQQMFHTDKSVL 49
>AC025721-2|AAK29901.3| 976|Caenorhabditis elegans Hypothetical
protein Y48G8AL.10 protein.
Length = 976
Score = 30.3 bits (65), Expect = 0.27
Identities = 11/34 (32%), Positives = 16/34 (47%)
Frame = +3
Query: 27 CPHCPRAFADCSNLNKHKKQVHKQVSLLSNESQP 128
CP CP F +L HK+ H + L ++P
Sbjct: 406 CPDCPTVFKKLGSLTAHKRACHLRTDTLKIPTKP 439
Score = 25.4 bits (53), Expect = 7.6
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Frame = +3
Query: 27 CPHCPRAFADCSNLNKHKKQVHKQVSLLSNESQ--PEW 134
CP+C +AF + L +H VH + L + S P+W
Sbjct: 292 CPYCNKAFVRPAELARH-SFVHLRAKHLQSSSTEIPKW 328
>Z66515-3|CAA91352.1| 322|Caenorhabditis elegans Hypothetical
protein R53.3b protein.
Length = 322
Score = 29.5 bits (63), Expect = 0.47
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = +3
Query: 27 CPHCPRAFADCSNLNKHKKQVHKQ 98
C +C R+F+ SNL +H + +H +
Sbjct: 253 CQYCERSFSISSNLQRHVRNIHNK 276
>Z66515-2|CAA91353.1| 543|Caenorhabditis elegans Hypothetical
protein R53.3a protein.
Length = 543
Score = 29.5 bits (63), Expect = 0.47
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = +3
Query: 27 CPHCPRAFADCSNLNKHKKQVHKQ 98
C +C R+F+ SNL +H + +H +
Sbjct: 474 CQYCERSFSISSNLQRHVRNIHNK 497
>S66936-1|AAB28820.1| 360|Caenorhabditis elegans Egl-43 protein.
Length = 360
Score = 29.5 bits (63), Expect = 0.47
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = +3
Query: 27 CPHCPRAFADCSNLNKHKKQVHKQ 98
C +C R+F+ SNL +H + +H +
Sbjct: 253 CQYCERSFSISSNLQRHVRNIHNK 276
>S66757-1|AAB28819.1| 581|Caenorhabditis elegans Egl-43 protein.
Length = 581
Score = 29.5 bits (63), Expect = 0.47
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = +3
Query: 27 CPHCPRAFADCSNLNKHKKQVHKQ 98
C +C R+F+ SNL +H + +H +
Sbjct: 474 CQYCERSFSISSNLQRHVRNIHNK 497
>AC024826-17|AAF60789.1| 662|Caenorhabditis elegans Hypothetical
protein Y55F3AM.14 protein.
Length = 662
Score = 29.5 bits (63), Expect = 0.47
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +3
Query: 27 CPHCPRAFADCSNLNKHKKQVHKQ 98
C CP+ FA + L H KQVH+Q
Sbjct: 218 CDFCPKTFALKNYLKLHVKQVHEQ 241
Score = 27.1 bits (57), Expect = 2.5
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +3
Query: 27 CPHCPRAFADCSNLNKHKK 83
C CP+AFA NL H++
Sbjct: 276 CKFCPKAFASQGNLQSHER 294
>Z79755-8|CAB02113.1| 270|Caenorhabditis elegans Hypothetical
protein F43G9.11 protein.
Length = 270
Score = 28.3 bits (60), Expect = 1.1
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +3
Query: 27 CPHCPRAFADCSNLNKH 77
C HC ++FAD SNL H
Sbjct: 221 CAHCGKSFADRSNLRAH 237
Score = 26.6 bits (56), Expect = 3.3
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +3
Query: 27 CPHCPRAFADCSNLNKHKKQVHK 95
C C +++A SNL++H KQ H+
Sbjct: 136 CDKCGKSYATTSNLSRH-KQTHR 157
>U41039-3|AAK68627.2| 537|Caenorhabditis elegans Synapse
defective protein 9, isoformc protein.
Length = 537
Score = 28.3 bits (60), Expect = 1.1
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = +3
Query: 27 CPHCPRAFADCSNLNKHKKQVH 92
CP CP++F+ L +H++ H
Sbjct: 22 CPQCPKSFSSTKLLQQHQQMFH 43
>AF169201-1|AAF01678.1| 270|Caenorhabditis elegans CES-1 protein.
Length = 270
Score = 28.3 bits (60), Expect = 1.1
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +3
Query: 27 CPHCPRAFADCSNLNKH 77
C HC ++FAD SNL H
Sbjct: 221 CAHCGKSFADRSNLRAH 237
Score = 26.6 bits (56), Expect = 3.3
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +3
Query: 27 CPHCPRAFADCSNLNKHKKQVHK 95
C C +++A SNL++H KQ H+
Sbjct: 136 CDKCGKSYATTSNLSRH-KQTHR 157
>M93256-1|AAB59181.1| 1110|Caenorhabditis elegans tra-1 protein.
Length = 1110
Score = 27.9 bits (59), Expect = 1.4
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +3
Query: 30 PHCPRAFADCSNLNKHKKQVH 92
P C +++ D S+L KH K VH
Sbjct: 342 PQCTKSYTDPSSLRKHIKAVH 362
>AL117202-5|CAB61040.2| 1109|Caenorhabditis elegans Hypothetical
protein Y47D3A.6a protein.
Length = 1109
Score = 27.9 bits (59), Expect = 1.4
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +3
Query: 30 PHCPRAFADCSNLNKHKKQVH 92
P C +++ D S+L KH K VH
Sbjct: 341 PQCTKSYTDPSSLRKHIKAVH 361
>AF045645-3|AAC02610.2| 193|Caenorhabditis elegans Hypothetical
protein K02D7.2 protein.
Length = 193
Score = 27.9 bits (59), Expect = 1.4
Identities = 11/18 (61%), Positives = 11/18 (61%)
Frame = +3
Query: 24 GCPHCPRAFADCSNLNKH 77
GC C R FAD SNL H
Sbjct: 125 GCEFCGRCFADRSNLRAH 142
>Z81529-12|CAB04303.1| 492|Caenorhabditis elegans Hypothetical
protein T05G11.1 protein.
Length = 492
Score = 27.5 bits (58), Expect = 1.9
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Frame = +3
Query: 15 SAR-GCPHCPRAFADCSNLNKHKKQVHK--QVSLLSNESQPE 131
SAR C C + F +L+KH +Q+H V +L N P+
Sbjct: 306 SARLSCKSCGKFFYSERSLSKHHRQIHMSGHVCVLCNHQMPK 347
Score = 26.6 bits (56), Expect = 3.3
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = +3
Query: 27 CPHCPRAFADCSNLNKHKKQVHK--QVSLLSNESQPE 131
C C + F+D +L +H++Q H + LL N PE
Sbjct: 14 CGICGKYFSDDESLREHRRQRHMTCHMCLLCNRRIPE 50
>U40959-2|AAA81766.1| 413|Caenorhabditis elegans Hypothetical
protein B0310.2 protein.
Length = 413
Score = 27.5 bits (58), Expect = 1.9
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +3
Query: 27 CPHCPRAFADCSNLNKHKK 83
CPHC + F NL +HKK
Sbjct: 338 CPHCHKKFNRKDNLLRHKK 356
>AL161712-9|CAC70134.1| 343|Caenorhabditis elegans Hypothetical
protein Y66D12A.12 protein.
Length = 343
Score = 27.5 bits (58), Expect = 1.9
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = +3
Query: 27 CPHCPRAFADCSNLNKHKKQVH 92
C HC + F ++LN+H+ H
Sbjct: 20 CGHCGKTFCHAASLNRHRLNFH 41
>AL023816-5|CAA19434.1| 492|Caenorhabditis elegans Hypothetical
protein T05G11.1 protein.
Length = 492
Score = 27.5 bits (58), Expect = 1.9
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Frame = +3
Query: 15 SAR-GCPHCPRAFADCSNLNKHKKQVHK--QVSLLSNESQPE 131
SAR C C + F +L+KH +Q+H V +L N P+
Sbjct: 306 SARLSCKSCGKFFYSERSLSKHHRQIHMSGHVCVLCNHQMPK 347
Score = 26.6 bits (56), Expect = 3.3
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = +3
Query: 27 CPHCPRAFADCSNLNKHKKQVHK--QVSLLSNESQPE 131
C C + F+D +L +H++Q H + LL N PE
Sbjct: 14 CGICGKYFSDDESLREHRRQRHMTCHMCLLCNRRIPE 50
>AF039710-10|AAB96693.2| 393|Caenorhabditis elegans Hypothetical
protein C46E10.9 protein.
Length = 393
Score = 27.1 bits (57), Expect = 2.5
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +3
Query: 9 VNSARGCPHCPRAFADCSNLNKHKK 83
VN C C + FA+ NLN+H+K
Sbjct: 206 VNRQFKCEICEKQFANKPNLNRHRK 230
>Z79603-2|CAB01893.4| 500|Caenorhabditis elegans Hypothetical
protein M163.2 protein.
Length = 500
Score = 26.6 bits (56), Expect = 3.3
Identities = 8/21 (38%), Positives = 15/21 (71%)
Frame = +3
Query: 30 PHCPRAFADCSNLNKHKKQVH 92
P+C ++F + S+ +KH K+ H
Sbjct: 324 PNCNKSFTNASDRSKHSKRTH 344
>U23454-9|AAC46522.2| 249|Caenorhabditis elegans Hypothetical
protein C10A4.8 protein.
Length = 249
Score = 26.6 bits (56), Expect = 3.3
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +3
Query: 27 CPHCPRAFADCSNLNKHK 80
C HC RAF NL +H+
Sbjct: 198 CEHCGRAFRQPGNLTRHR 215
>Z81466-5|CAE45043.1| 1309|Caenorhabditis elegans Hypothetical
protein C09H6.1b protein.
Length = 1309
Score = 26.2 bits (55), Expect = 4.4
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +3
Query: 27 CPHCPRAFADCSNLNKH 77
CPHCP + + LN+H
Sbjct: 329 CPHCPFTTSTVTRLNRH 345
>Z81466-4|CAB03868.2| 1311|Caenorhabditis elegans Hypothetical
protein C09H6.1a protein.
Length = 1311
Score = 26.2 bits (55), Expect = 4.4
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +3
Query: 27 CPHCPRAFADCSNLNKH 77
CPHCP + + LN+H
Sbjct: 329 CPHCPFTTSTVTRLNRH 345
>AL132949-5|CAB61074.1| 144|Caenorhabditis elegans Hypothetical
protein Y53F4B.5 protein.
Length = 144
Score = 26.2 bits (55), Expect = 4.4
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +3
Query: 27 CPHCPRAFADCSNLNKHKKQVHKQVSLLSNE 119
CP+C R FA ++ H++ H ++ S E
Sbjct: 67 CPYCRRLFASQKEVDGHQENRHAELDWKSVE 97
>Z81556-2|CAB04525.2| 445|Caenorhabditis elegans Hypothetical
protein F58G1.2 protein.
Length = 445
Score = 25.8 bits (54), Expect = 5.8
Identities = 9/22 (40%), Positives = 11/22 (50%)
Frame = +3
Query: 27 CPHCPRAFADCSNLNKHKKQVH 92
CP C + F L KH+K H
Sbjct: 317 CPDCNQKFLTPRKLRKHRKMAH 338
>AC006625-13|ABI18147.1| 273|Caenorhabditis elegans Abnormal
chemotaxis protein 1,isoform b protein.
Length = 273
Score = 25.8 bits (54), Expect = 5.8
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = +3
Query: 27 CPHCPRAFADCSNLNKH 77
C C +AF D S L KH
Sbjct: 224 CAQCEKAFTDSSTLTKH 240
>AC006625-12|AAK68272.2| 214|Caenorhabditis elegans Abnormal
chemotaxis protein 1,isoform a protein.
Length = 214
Score = 25.8 bits (54), Expect = 5.8
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = +3
Query: 27 CPHCPRAFADCSNLNKH 77
C C +AF D S L KH
Sbjct: 165 CAQCEKAFTDSSTLTKH 181
>Z36752-3|CAA85325.1| 422|Caenorhabditis elegans Hypothetical
protein F35H8.3 protein.
Length = 422
Score = 25.4 bits (53), Expect = 7.6
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = +3
Query: 24 GCPHCPRAFADCSNLNKHKKQVH 92
GC C + F D S L KH+ H
Sbjct: 357 GCGKCDKRFRDNSCLRKHELAAH 379
>U41542-13|ABO16442.1| 390|Caenorhabditis elegans Hsn abnormal
migration protein2, isoform a protein.
Length = 390
Score = 25.4 bits (53), Expect = 7.6
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = +3
Query: 27 CPHCPRAFADCSNLNKHKKQVH 92
C C + F S+L++H+ Q H
Sbjct: 18 CSICQKVFCHSSSLSRHRMQAH 39
>U41542-12|ABO16443.1| 392|Caenorhabditis elegans Hsn abnormal
migration protein2, isoform b protein.
Length = 392
Score = 25.4 bits (53), Expect = 7.6
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = +3
Query: 27 CPHCPRAFADCSNLNKHKKQVH 92
C C + F S+L++H+ Q H
Sbjct: 18 CSICQKVFCHSSSLSRHRMQAH 39
>L16559-6|AAA27931.1| 397|Caenorhabditis elegans Hypothetical
protein C06E1.8 protein.
Length = 397
Score = 25.4 bits (53), Expect = 7.6
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = +3
Query: 27 CPHCPRAFADCSNLNKHKKQVH 92
C C + F S+L++H+ Q H
Sbjct: 53 CSICSKVFCHSSSLSRHRMQAH 74
>AF101305-8|AAF98599.1| 534|Caenorhabditis elegans Hypothetical
protein C04F5.9 protein.
Length = 534
Score = 25.4 bits (53), Expect = 7.6
Identities = 10/28 (35%), Positives = 13/28 (46%)
Frame = +3
Query: 9 VNSARGCPHCPRAFADCSNLNKHKKQVH 92
V+S CP C R F L++H H
Sbjct: 258 VSSTEECPKCNRYFHSLGRLDQHTHAFH 285
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,935,580
Number of Sequences: 27780
Number of extensions: 25261
Number of successful extensions: 207
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 313072342
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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