Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_O10
         (299 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    29   0.016
L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    26   0.087
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    26   0.12 
L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    21   3.3  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    21   3.3  
DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein ...    20   5.7  
AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein ...    20   5.7  
AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific pro...    20   5.7  

>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 28.7 bits (61), Expect = 0.016
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +3

Query: 9   VNSARGCPHCPRAFADCSNLNKHKKQVHKQVSLL 110
           +N  + CP+C R F+   +L +H +  H+Q   L
Sbjct: 2   INEPQECPYCRRNFSCYYSLKRHFQDKHEQSDTL 35



 Score = 20.2 bits (40), Expect = 5.7
 Identities = 7/23 (30%), Positives = 11/23 (47%)
 Frame = +3

Query: 27  CPHCPRAFADCSNLNKHKKQVHK 95
           C  C R +   ++L  HK   H+
Sbjct: 38  CEFCNRRYRTKNSLTTHKSLQHR 60


>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 26.2 bits (55), Expect = 0.087
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 27  CPHCPRAFADCSNLNKHKKQVH 92
           C HC R F   +NL +H + VH
Sbjct: 40  CSHCDRQFVQVANLRRHLR-VH 60


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 25.8 bits (54), Expect = 0.12
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +3

Query: 27  CPHCPRAFADCSNLNKHKKQVHKQVSLLSNESQ 125
           C  C R ++  ++L  HK   H+Q S   NE Q
Sbjct: 35  CNICKRVYSSLNSLRNHKSIYHRQHS--KNEQQ 65


>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
          protein.
          Length = 81

 Score = 21.0 bits (42), Expect = 3.3
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +3

Query: 27 CPHCPRAFA 53
          C HC RAFA
Sbjct: 73 CQHCNRAFA 81


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 21.0 bits (42), Expect = 3.3
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +3

Query: 3   AAVNSARGCPHCPRAFADCSNLNKHKKQVH 92
           A VN+      C ++    +N NK+K Q H
Sbjct: 406 ANVNNLIKNTRCAKSNNQNNNQNKYKNQAH 435


>DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein 3
           protein.
          Length = 130

 Score = 20.2 bits (40), Expect = 5.7
 Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = +3

Query: 39  PRAFA-DCSNLNKHKKQVHKQVSLLSNESQPE 131
           P A A DC      +++V K+V     E++PE
Sbjct: 69  PDALATDCKKCTDKQREVIKKVIKFLVENKPE 100


>AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein
           protein.
          Length = 130

 Score = 20.2 bits (40), Expect = 5.7
 Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = +3

Query: 39  PRAFA-DCSNLNKHKKQVHKQVSLLSNESQPE 131
           P A A DC      +++V K+V     E++PE
Sbjct: 69  PDALATDCKKCTDKQREVIKKVIKFLVENKPE 100


>AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific
           protein 3c precursor protein.
          Length = 130

 Score = 20.2 bits (40), Expect = 5.7
 Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = +3

Query: 39  PRAFA-DCSNLNKHKKQVHKQVSLLSNESQPE 131
           P A A DC      +++V K+V     E++PE
Sbjct: 69  PDALATDCKKCTDKQREVIKKVIKFLVENKPE 100


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,842
Number of Sequences: 438
Number of extensions: 255
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  6244050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)