Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_O08
         (323 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0018 - 40488702-40488833,40488928-40489020,40489125-404892...    65   1e-11
09_04_0677 - 19388888-19389019,19389124-19389216,19389317-193894...    64   2e-11
08_02_0211 - 14333553-14333684,14333795-14333887,14334019-143341...    64   2e-11
03_02_0112 + 5689439-5689474,5689629-5689778,5690194-5690361,569...    27   4.5  
03_01_0359 - 2805094-2805175,2805256-2805347,2805443-2805517,280...    26   7.8  
02_03_0077 + 14874273-14874571,14875304-14876150,14876878-148771...    26   7.8  
01_05_0233 - 19641309-19641871,19650741-19650892,19651193-19651308     26   7.8  

>01_07_0018 -
           40488702-40488833,40488928-40489020,40489125-40489253,
           40489379-40489500,40490292-40490544,40490636-40490638
          Length = 243

 Score = 65.3 bits (152), Expect = 1e-11
 Identities = 29/45 (64%), Positives = 35/45 (77%)
 Frame = +1

Query: 187 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLK 321
           LFEKR K F IG  + P +DL RFVRWPK +RIQRQ+ VL++RLK
Sbjct: 25  LFEKRPKQFGIGGALPPRKDLHRFVRWPKAVRIQRQRRVLKQRLK 69


>09_04_0677 -
           19388888-19389019,19389124-19389216,19389317-19389445,
           19389559-19389728,19390280-19390481,19390576-19390623,
           19390797-19390799
          Length = 258

 Score = 64.1 bits (149), Expect = 2e-11
 Identities = 27/45 (60%), Positives = 35/45 (77%)
 Frame = +1

Query: 187 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLK 321
           LFEKR K F IG  + P +DL RFV+WPK +RIQRQ+ +L++RLK
Sbjct: 24  LFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQRRILKQRLK 68


>08_02_0211 -
           14333553-14333684,14333795-14333887,14334019-14334105,
           14334220-14334389,14334985-14335186,14335604-14335606
          Length = 228

 Score = 64.1 bits (149), Expect = 2e-11
 Identities = 27/45 (60%), Positives = 35/45 (77%)
 Frame = +1

Query: 187 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLK 321
           LFEKR K F IG  + P +DL RFV+WPK +RIQRQ+ +L++RLK
Sbjct: 8   LFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQRRILKQRLK 52


>03_02_0112 +
           5689439-5689474,5689629-5689778,5690194-5690361,
           5691334-5691458,5691914-5692007,5692844-5692942,
           5693730-5693910,5694051-5694166,5694758-5694913,
           5695226-5695354,5695554-5695718
          Length = 472

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -3

Query: 297 LLTLDANIFRPSHETG*ISGWL 232
           LLT + N  RPSH    + GW+
Sbjct: 102 LLTKNPNFVRPSHRLNEVQGWV 123


>03_01_0359 -
           2805094-2805175,2805256-2805347,2805443-2805517,
           2805582-2805675,2805769-2805872,2806777-2806885,
           2807397-2807609,2808170-2808289,2809060-2809115,
           2809210-2809287,2809374-2809733
          Length = 460

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +3

Query: 183 PSIREENKELCYWPGHPAN 239
           P   E N ++C W GHP N
Sbjct: 90  PVDHEINSKICLWRGHPWN 108


>02_03_0077 +
           14874273-14874571,14875304-14876150,14876878-14877147,
           14877313-14878065
          Length = 722

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 9/27 (33%), Positives = 19/27 (70%)
 Frame = -2

Query: 316 DDAVTQPFDAGCEYISAIARNGIDLWL 236
           D+++ + ++   EY++A  R+G+D WL
Sbjct: 19  DESIPEVWERLQEYVAACPRHGMDDWL 45


>01_05_0233 - 19641309-19641871,19650741-19650892,19651193-19651308
          Length = 276

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -2

Query: 316 DDAVTQPFDAGCEYISAIARNGIDLWL 236
           D+ + + ++   EY++A   NG+D WL
Sbjct: 164 DETIPKAWERLQEYVAACPHNGMDNWL 190


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,478,373
Number of Sequences: 37544
Number of extensions: 119966
Number of successful extensions: 364
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 360
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 364
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 423156300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)