Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_O06
(325 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC26A3.04 |rpl2002|rpl20, rpl20-2|60S ribosomal protein L20|Sc... 64 5e-12
SPAC3A12.10 |rpl2001|rpl20-1, rpl20, yl17b, rpl18a-2|60S ribosom... 64 5e-12
SPBC1683.05 |||thiamine transporter |Schizosaccharomyces pombe|c... 29 0.17
SPAC644.12 |cdc5||cell division control protein Cdc5|Schizosacch... 27 0.70
SPAC26H5.04 |||vacuolar import and degradation protein Vid28|Sch... 26 1.2
SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase Ppk38|Schizo... 26 1.6
SPBC26H8.01 |thi2|nmt2|thiazole biosynthetic enzyme|Schizosaccha... 25 2.1
SPBC8D2.05c |sfi1||spindle pole body protein Sfi1|Schizosaccharo... 25 2.1
SPBC30B4.03c |||conserved protein |Schizosaccharomyces pombe|chr... 25 2.1
SPBC16H5.10c |prp43||ATP-dependent RNA helicase Prp43|Schizosacc... 25 2.8
SPBC365.14c |||UDP-glucose 4-epimerase |Schizosaccharomyces pomb... 25 3.7
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb... 25 3.7
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce... 24 4.9
SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase Rdp1|Schizosa... 24 4.9
SPCC4F11.02 |ptc1||protein phosphatase 2C Ptc1|Schizosaccharomyc... 24 6.5
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp... 24 6.5
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 24 6.5
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 24 6.5
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro... 24 6.5
SPAC8E11.03c |dmc1|dmp1|RecA family ATPase Dmc1|Schizosaccharomy... 24 6.5
SPCC191.10 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 23 8.6
SPBC947.12 |kms2||spindle pole body protein Kms2|Schizosaccharom... 23 8.6
SPAC8F11.07c |cdc24||DNA replication protein Cdc24|Schizosacchar... 23 8.6
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 23 8.6
>SPAC26A3.04 |rpl2002|rpl20, rpl20-2|60S ribosomal protein
L20|Schizosaccharomyces pombe|chr 1|||Manual
Length = 176
Score = 64.1 bits (149), Expect = 5e-12
Identities = 25/53 (47%), Positives = 40/53 (75%)
Frame = +1
Query: 127 LPPIQKLRIFSPDPIVAKSRFWYFLRQLKKFKKTTGEIVSIKQIPEKSPVRLR 285
+P + ++R+F+P+ VAKSR+WYFL+ + K KK TGEIV+I +I E P++ +
Sbjct: 20 VPKLFRMRLFAPNESVAKSRYWYFLKMINKVKKATGEIVAINEISEPKPLKAK 72
>SPAC3A12.10 |rpl2001|rpl20-1, rpl20, yl17b, rpl18a-2|60S ribosomal
protein L20a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 176
Score = 64.1 bits (149), Expect = 5e-12
Identities = 25/53 (47%), Positives = 40/53 (75%)
Frame = +1
Query: 127 LPPIQKLRIFSPDPIVAKSRFWYFLRQLKKFKKTTGEIVSIKQIPEKSPVRLR 285
+P + ++R+F+P+ VAKSR+WYFL+ + K KK TGEIV+I +I E P++ +
Sbjct: 20 VPKLFRMRLFAPNESVAKSRYWYFLKMINKVKKATGEIVAINEISEPKPLKAK 72
>SPBC1683.05 |||thiamine transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 559
Score = 29.1 bits (62), Expect = 0.17
Identities = 12/50 (24%), Positives = 20/50 (40%)
Frame = +1
Query: 52 LLMWSINVAPPKAFPXS*RKRSPKALPPIQKLRIFSPDPIVAKSRFWYFL 201
L+ W +N+ FP PP + P + K +FWY++
Sbjct: 512 LIYWGLNLV----FPAKETLLEEAVYPPKSNAELVDPSTLSGKDKFWYYI 557
>SPAC644.12 |cdc5||cell division control protein
Cdc5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 757
Score = 27.1 bits (57), Expect = 0.70
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = -3
Query: 320 QSETRKQPDTKVLNLTGLFSGICLMDTISPVVFLNFFNCLKKYQK 186
++E ++ D K+L+L L TI+P+V CL++YQK
Sbjct: 58 KTEWSREEDEKLLHLAKLLP--TQWRTIAPIVGRTATQCLERYQK 100
>SPAC26H5.04 |||vacuolar import and degradation protein
Vid28|Schizosaccharomyces pombe|chr 1|||Manual
Length = 729
Score = 26.2 bits (55), Expect = 1.2
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +2
Query: 59 CGPLMWPRQKPSPXREESGAPKPSLLYKN*GFSLLILLWQN 181
C ++WP+Q SP +E+ + S+L +N GF + + QN
Sbjct: 671 CINILWPKQCTSPSQEDK--ERASIL-QNLGFGECLQMLQN 708
>SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase
Ppk38|Schizosaccharomyces pombe|chr 3|||Manual
Length = 650
Score = 25.8 bits (54), Expect = 1.6
Identities = 17/43 (39%), Positives = 22/43 (51%)
Frame = -2
Query: 273 RTLFWNLLDGYNFTSSLFELLQLPQEIPETRFCHNRIRRENPQ 145
RT L+D YN TSSL ++ P +P+ N ENPQ
Sbjct: 499 RTSVNRLVDRYNHTSSLNKVAAAPAPVPKP---VNLKSVENPQ 538
>SPBC26H8.01 |thi2|nmt2|thiazole biosynthetic
enzyme|Schizosaccharomyces pombe|chr 2|||Manual
Length = 328
Score = 25.4 bits (53), Expect = 2.1
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Frame = -3
Query: 242 TISPVVFLNFFNCLKKYQKRDFATIGSGEKILN--FCIGGRALGLRF-LHEXGKAFGG 78
T+S + +F+ L KY + D +G+G L + IG R L+ + E A GG
Sbjct: 58 TVSRAMTRRYFSDLDKYAESDIVIVGAGSAGLTAAYYIGTRRPDLKIAIIEASVAPGG 115
>SPBC8D2.05c |sfi1||spindle pole body protein
Sfi1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 840
Score = 25.4 bits (53), Expect = 2.1
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = +1
Query: 163 DPIVAKSRFWYFLRQLKKFK 222
D ++ RFWY+L + K F+
Sbjct: 476 DRLIVTFRFWYYLMKAKSFQ 495
>SPBC30B4.03c |||conserved protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 391
Score = 25.4 bits (53), Expect = 2.1
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +3
Query: 132 SYTKIEDFLS*SYCGKISFLVFL 200
SY + FL SYCGK+ + FL
Sbjct: 80 SYAALPRFLYLSYCGKLKKMSFL 102
>SPBC16H5.10c |prp43||ATP-dependent RNA helicase
Prp43|Schizosaccharomyces pombe|chr 2|||Manual
Length = 735
Score = 25.0 bits (52), Expect = 2.8
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +1
Query: 124 ALPPIQKLRIFSPDPIVAKSRF 189
+LPP Q+ RIF P P KS +
Sbjct: 329 SLPPNQQQRIFEPTPEDTKSGY 350
>SPBC365.14c |||UDP-glucose 4-epimerase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 355
Score = 24.6 bits (51), Expect = 3.7
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = -3
Query: 221 LNFFNCLKKYQKRDF 177
+N C+KKY RDF
Sbjct: 111 INLIECMKKYNVRDF 125
>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1428
Score = 24.6 bits (51), Expect = 3.7
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = +1
Query: 133 PIQKLRIFSPDPIVAKSRFWY 195
P +R +SP+ ++ S FWY
Sbjct: 488 PFLDIRKYSPNEVLCMSPFWY 508
>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2100
Score = 24.2 bits (50), Expect = 4.9
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -2
Query: 189 ETRFCHNRIRRENPQFLY 136
E +F RI R NPQFL+
Sbjct: 483 EHKFVFVRIERTNPQFLF 500
>SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase
Rdp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1215
Score = 24.2 bits (50), Expect = 4.9
Identities = 8/21 (38%), Positives = 12/21 (57%)
Frame = +3
Query: 243 IHQANSRKESCKIKNFGIWLL 305
+H AN R ++C I+ W L
Sbjct: 47 LHSANKRNDNCLIQRSSTWRL 67
>SPCC4F11.02 |ptc1||protein phosphatase 2C Ptc1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 347
Score = 23.8 bits (49), Expect = 6.5
Identities = 12/43 (27%), Positives = 20/43 (46%)
Frame = -3
Query: 215 FFNCLKKYQKRDFATIGSGEKILNFCIGGRALGLRFLHEXGKA 87
FF K +R T +G+ + C G+A+ L + H+ A
Sbjct: 172 FFRYEKNRTRRVLYTANAGDARIVLCRDGKAIRLSYDHKGSDA 214
>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
Spt6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1365
Score = 23.8 bits (49), Expect = 6.5
Identities = 16/63 (25%), Positives = 28/63 (44%)
Frame = +1
Query: 136 IQKLRIFSPDPIVAKSRFWYFLRQLKKFKKTTGEIVSIKQIPEKSPVRLRTLVSGCLRVS 315
++K+R+ DP + ++ L + F TGE Q PV +R + + + V
Sbjct: 1009 LEKIRLELKDPYGEQRNVFHKLTPSEIFLMLTGENPEELQADAIVPVNVRRVTNRFVAVK 1068
Query: 316 LWC 324
L C
Sbjct: 1069 LDC 1071
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 23.8 bits (49), Expect = 6.5
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = +1
Query: 82 PKAFPXS*RKRSPKALPPIQKLRIFSPDP 168
PK P R R PP +K +FS DP
Sbjct: 475 PKFIPEDSRLREITLRPPKEKNLVFSLDP 503
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 23.8 bits (49), Expect = 6.5
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +3
Query: 33 EKFEKEVIDVVH*CGPAKSLPLFVKKAEPQSPPSY 137
E E++VID+ GP KS L + E P Y
Sbjct: 15 EMAEEQVIDIFKQSGPVKSFQLVI-DPESGQPKGY 48
>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1385
Score = 23.8 bits (49), Expect = 6.5
Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
Frame = +1
Query: 73 VAPPKAF--PXS*RKRSPKALPPIQKLRIFSPDPIVAKSRFWYFLRQLKKFKKTTGE 237
VAPP P P+ +P + + P P+ + +YFLR + +K E
Sbjct: 750 VAPPNVSGSPSETPISKPEKVPVVSQTEKALPKPLGVDTEKYYFLRYNNQTRKVKVE 806
>SPAC8E11.03c |dmc1|dmp1|RecA family ATPase Dmc1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 332
Score = 23.8 bits (49), Expect = 6.5
Identities = 17/65 (26%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
Frame = -3
Query: 251 LMDTISPVVFLNFFNCLKKYQKRDFA-TIGSGEKILNFCIGGRALGLRFLHEXGKAFGGA 75
L + S + NF ++ Q R +I +G + LN +GG + G+ G
Sbjct: 67 LKEAASKMCPANFSTAMEISQNRKKVWSISTGSEALNGILGGGIQSMSITEVFGEFRCGK 126
Query: 74 TLMDH 60
T M H
Sbjct: 127 TQMSH 131
>SPCC191.10 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 149
Score = 23.4 bits (48), Expect = 8.6
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +1
Query: 217 FKKTTGEIVSIKQIPEKSPVRLRTLVSGCLR 309
FKK G+ ++ IP+ SP ++ + S C R
Sbjct: 30 FKKNAGKAINAHLIPKLSP-KMNIMRSSCGR 59
>SPBC947.12 |kms2||spindle pole body protein
Kms2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 457
Score = 23.4 bits (48), Expect = 8.6
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +3
Query: 168 YCGKISFLVFLEAVEEV 218
Y GK+S FLE V++V
Sbjct: 18 YTGKVSIQAFLEIVDDV 34
>SPAC8F11.07c |cdc24||DNA replication protein
Cdc24|Schizosaccharomyces pombe|chr 1|||Manual
Length = 501
Score = 23.4 bits (48), Expect = 8.6
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +1
Query: 256 IPEKSPVRLRTLVSGCLRVSLW 321
+PE +P+ + V CLR S W
Sbjct: 415 LPEVNPLTAKMEVIDCLRNSFW 436
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 23.4 bits (48), Expect = 8.6
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +2
Query: 65 PLMWPRQKPSPXREESGAPKPSL 133
P W R+ P P RE S P+ +L
Sbjct: 224 PREWVRRGPLPPRESSERPRLNL 246
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,440,596
Number of Sequences: 5004
Number of extensions: 29180
Number of successful extensions: 81
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 87815546
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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