Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_O06
(325 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0730 - 31552747-31553088,31553583-31553646,31553743-315538... 60 5e-10
05_07_0131 + 27898028-27898042,27898159-27898274,27898361-278984... 57 3e-09
01_06_0180 - 27260099-27260440,27261236-27261350,27261403-272615... 37 0.003
04_01_0021 + 311914-312399,314218-314310,314391-314672,314754-31... 28 1.5
01_06_0027 - 25742122-25742310,25742481-25742553,25743219-25744159 28 1.5
06_01_0288 - 2106113-2109055 28 1.9
01_01_1013 - 8015552-8015613,8016898-8018035 27 4.5
06_02_0190 + 12832559-12832916,12833012-12833092,12833262-12833305 26 5.9
06_03_0912 + 25896152-25896451,25896528-25897296,25897492-258976... 26 7.8
04_01_0122 + 1267048-1267149,1267764-1267855,1268137-1268234,126... 26 7.8
>01_06_0730 -
31552747-31553088,31553583-31553646,31553743-31553858,
31553964-31553978
Length = 178
Score = 59.7 bits (138), Expect = 5e-10
Identities = 23/52 (44%), Positives = 41/52 (78%)
Frame = +1
Query: 130 PPIQKLRIFSPDPIVAKSRFWYFLRQLKKFKKTTGEIVSIKQIPEKSPVRLR 285
P I ++++++ + + AKS+FWYFLR+LKK KK+ G+I++I +I EK+P ++
Sbjct: 24 PKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQILAINEIFEKNPTTIK 75
>05_07_0131 +
27898028-27898042,27898159-27898274,27898361-27898424,
27899450-27899791
Length = 178
Score = 57.2 bits (132), Expect = 3e-09
Identities = 21/52 (40%), Positives = 41/52 (78%)
Frame = +1
Query: 130 PPIQKLRIFSPDPIVAKSRFWYFLRQLKKFKKTTGEIVSIKQIPEKSPVRLR 285
P I ++++++ + + AKS+FWYFLR+LKK KK+ G++++I +I E++P ++
Sbjct: 24 PKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFERNPTTIK 75
>01_06_0180 -
27260099-27260440,27261236-27261350,27261403-27261518,
27261594-27261608
Length = 195
Score = 37.1 bits (82), Expect = 0.003
Identities = 14/31 (45%), Positives = 25/31 (80%)
Frame = +1
Query: 193 YFLRQLKKFKKTTGEIVSIKQIPEKSPVRLR 285
YFLR+LKK KK+ G++++I +I E++P ++
Sbjct: 62 YFLRKLKKVKKSNGQMLAINEIFERNPTTIK 92
>04_01_0021 +
311914-312399,314218-314310,314391-314672,314754-314826,
315273-315405,315476-315629,315763-315843,316174-316296,
316629-316787,316862-316996,317159-317254,317416-317910,
318651-318722,319496-319537
Length = 807
Score = 28.3 bits (60), Expect = 1.5
Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
Frame = -3
Query: 242 TISPVVF--LNFFNCLKKYQKR-DFATIGSGEKILNFCIGGRALGLRFLHEXGKAFG 81
+ISP F +N + Y D+A + SG + + C G +GL H G G
Sbjct: 520 SISPTAFFQVNTLAAERLYTLAGDWANLNSGTLLFDVCCGTGTIGLTLAHRVGMVVG 576
>01_06_0027 - 25742122-25742310,25742481-25742553,25743219-25744159
Length = 400
Score = 28.3 bits (60), Expect = 1.5
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +2
Query: 65 PLMWPRQKPSPXREESGAPKPSL 133
PL++P PS REE P PSL
Sbjct: 48 PLLFPESAPSTPREEYHTPPPSL 70
>06_01_0288 - 2106113-2109055
Length = 980
Score = 27.9 bits (59), Expect = 1.9
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = -3
Query: 116 LRFLHEXGKAFGGATLMDHINNFFFKLLHFSAFH 15
LR+L+ G FGG + D I + F KL H H
Sbjct: 108 LRYLNLSGNDFGGVAIPDFIGS-FSKLRHLDLSH 140
>01_01_1013 - 8015552-8015613,8016898-8018035
Length = 399
Score = 26.6 bits (56), Expect = 4.5
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = -2
Query: 222 FELLQLPQEIPETRFCHNRIRRENPQFLYRREGFGAPLSSR 100
++ +LP+EIP F H + F R FG L +R
Sbjct: 308 YKATKLPREIPTVAFIHPELPGNVAYFFMRSRLFGVNLYTR 348
>06_02_0190 + 12832559-12832916,12833012-12833092,12833262-12833305
Length = 160
Score = 26.2 bits (55), Expect = 5.9
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = +1
Query: 166 PIVAKSRFWYFLRQLKKFKKTTGEIVSIKQIPEKS--PVRLRTLVS 297
P+VA R W + K TT + +K + E + P ++ TLVS
Sbjct: 5 PVVAADRVWRDAYGVSTEKWTTKVEIKVKNVSEHANHPSKMETLVS 50
>06_03_0912 +
25896152-25896451,25896528-25897296,25897492-25897658,
25898932-25901013,25901155-25901730,25904503-25905648,
25907056-25908693
Length = 2225
Score = 25.8 bits (54), Expect = 7.8
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Frame = +3
Query: 72 CGPAKSLPLFVKKAEPQSPPSYTKIEDFLS*SYCGKISFLVFLEAVEEVQKD-YW*NCIH 248
C +SLPLF ++ S FL+ S+C ++ L FLE E Q D Y N +H
Sbjct: 602 CTSLESLPLFSSQSGGLQKLS------FLNVSHCSQLVKLSFLEEKLEKQPDHYLPNMVH 655
>04_01_0122 +
1267048-1267149,1267764-1267855,1268137-1268234,
1268333-1268488,1268736-1269355,1269480-1269547,
1269848-1270099,1270390-1270525,1271054-1271246,
1271386-1271939
Length = 756
Score = 25.8 bits (54), Expect = 7.8
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -3
Query: 251 LMDTISPVVFLNFFNCLKKYQKRDFATIGSGEKI 150
L+ I+P+ +L FFNC+ +D T G I
Sbjct: 613 LIYDINPLDYLKFFNCMGGLGSQDNCTTTKGSVI 646
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,351,045
Number of Sequences: 37544
Number of extensions: 197089
Number of successful extensions: 604
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 604
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 423156300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -