Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_O05
         (354 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.03c |tpx1||thioredoxin peroxidase Tpx1|Schizosaccharomyc...    29   0.21 
SPBC13E7.10c |brf1|SPBC30D10.20|transcription factor TFIIIB comp...    27   0.85 
SPBC1539.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   1.5  
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig...    26   2.0  
SPAC11E3.14 |||conserved protein|Schizosaccharomyces pombe|chr 1...    26   2.0  
SPAC12B10.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    24   7.9  
SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase comp...    24   7.9  

>SPCC576.03c |tpx1||thioredoxin peroxidase Tpx1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 192

 Score = 29.1 bits (62), Expect = 0.21
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = +3

Query: 297 ISKPAPEWEATAVLNGEF 350
           I KPAP+++ TAV+NG F
Sbjct: 5   IGKPAPDFKGTAVVNGAF 22


>SPBC13E7.10c |brf1|SPBC30D10.20|transcription factor TFIIIB complex
           subunit Brf1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 500

 Score = 27.1 bits (57), Expect = 0.85
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +3

Query: 171 LGCTNCKSSLFESDSGYAFGSGNVF 245
           +GC NC S+ FESD+     SGN +
Sbjct: 9   MGCPNCGSTTFESDT----ASGNTY 29


>SPBC1539.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 386

 Score = 26.2 bits (55), Expect = 1.5
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +1

Query: 247 LVEQEKMITNYSSLKP*YRSRRPNGKQLQY 336
           ++E++K I  Y + +P YR    NGK+++Y
Sbjct: 176 ILEEKKKIPLYPNGQPKYRKILENGKKVKY 205


>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
           E3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1647

 Score = 25.8 bits (54), Expect = 2.0
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +3

Query: 153 VSIVLLLGCTNCKSSLFES 209
           VSI L+L CT C S++ E+
Sbjct: 432 VSIQLMLSCTTCVSNMMEA 450


>SPAC11E3.14 |||conserved protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 588

 Score = 25.8 bits (54), Expect = 2.0
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +1

Query: 175 AVRIVNRRYLKVILVMLLEVGMYFLVEQEKMITNYSSL 288
           AV+ + +RY K  L  ++E  +YFL  + +M      L
Sbjct: 280 AVKDIRKRYSKGALWAVMEAKIYFLTGESQMALEMEEL 317


>SPAC12B10.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 419

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 9/31 (29%), Positives = 15/31 (48%)
 Frame = -3

Query: 235 PLPKA*PESLSNNDDLQFVQPNNNTIETTIY 143
           P+P+    ++    DL    PN+N +   IY
Sbjct: 314 PVPEVQTTNIGYQTDLPLQNPNDNLVSLAIY 344


>SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase complex
           beta subunit Qcr1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 457

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -3

Query: 253 PPGNTFPLPKA*PESLSNNDDLQFVQPN 170
           P G T   PK   ESL+  D LQ+++ N
Sbjct: 171 PLGRTILGPKENIESLTREDLLQYIKDN 198


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,312,229
Number of Sequences: 5004
Number of extensions: 21618
Number of successful extensions: 63
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 105935336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)