Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_O05
         (354 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0061 + 6468190-6471046,6471318-6471736                           27   4.2  
11_01_0451 + 3499084-3501757,3501907-3502275,3502358-3502389           26   9.8  
09_04_0727 + 19765175-19765384,19765523-19765595,19766476-197665...    26   9.8  

>02_02_0061 + 6468190-6471046,6471318-6471736
          Length = 1091

 Score = 27.1 bits (57), Expect = 4.2
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -3

Query: 217 PESLSNNDDLQFVQPNNNTIETTI 146
           PE L N   L+F++ NNN  E TI
Sbjct: 450 PEGLGNLVSLKFIEMNNNFYEGTI 473


>11_01_0451 + 3499084-3501757,3501907-3502275,3502358-3502389
          Length = 1024

 Score = 25.8 bits (54), Expect = 9.8
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -3

Query: 262 FLAPPGNTFPLPKA*PESLSNNDDLQFVQPNNNTIETTI 146
           FL  P N+F      P+SL N   LQ +  +NNT++  I
Sbjct: 102 FLFLPANSFT--GEIPQSLGNMHHLQIIYLSNNTLQGKI 138


>09_04_0727 +
           19765175-19765384,19765523-19765595,19766476-19766570,
           19766666-19768450,19768533-19768721,19768816-19768958,
           19769075-19769320,19769975-19770059,19770117-19770191,
           19770304-19770369,19770466-19770712,19770824-19771242
          Length = 1210

 Score = 25.8 bits (54), Expect = 9.8
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +3

Query: 162 VLLLGCTNCKSSLFESDSGYAFGSGNVFPGGARKDDHKLQFTKAM 296
           VLLLG ++      E +    F S NV+      DD ++++  A+
Sbjct: 806 VLLLGTSSVAFGDLEEECASIFSSRNVYEVDQPSDDDRMRYLHAL 850


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,067,967
Number of Sequences: 37544
Number of extensions: 153475
Number of successful extensions: 381
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 377
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 381
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 530315984
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)