Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_O02
         (458 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003139-2|AAB54165.1|  244|Caenorhabditis elegans Ribosomal pro...   217   4e-57
U39999-8|AAY44011.1|  146|Caenorhabditis elegans Hypothetical pr...    27   6.6  
Z32683-15|CAE17933.2|  375|Caenorhabditis elegans Hypothetical p...    27   8.7  

>AF003139-2|AAB54165.1|  244|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7 protein.
          Length = 244

 Score =  217 bits (529), Expect = 4e-57
 Identities = 95/149 (63%), Positives = 124/149 (83%)
 Frame = +1

Query: 10  RDEIRLARQARNRGNYYVPGEAKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNGVFVRL 189
           ++ +RL R+A  +G++YVP E K+AFV+RIRG+NQ+ PK RK LQ+ RLRQINNGVFV+L
Sbjct: 62  KEGLRLKREAEAKGDFYVPAEHKVAFVVRIRGINQLHPKPRKALQILRLRQINNGVFVKL 121

Query: 190 NKATVNMLRIAEPYIAWGYPNWKSVRELVYKRGFAKLNGKRVPITSNSLIEKRLSKQNII 369
           NKAT+ +LRI EPY+AWGYPN K++ +L+YKRG+AK++G RVPIT N+++E+ L K NII
Sbjct: 122 NKATLPLLRIIEPYVAWGYPNNKTIHDLLYKRGYAKVDGNRVPITDNTIVEQSLGKFNII 181

Query: 370 CVEDLIHEIFTVGEKFKYASNFLWTFKLN 456
           C+EDL HEI TVG  FK A+NFLW FKLN
Sbjct: 182 CLEDLAHEIATVGPHFKEATNFLWPFKLN 210


>U39999-8|AAY44011.1|  146|Caenorhabditis elegans Hypothetical
           protein F41G3.19 protein.
          Length = 146

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
 Frame = +2

Query: 62  CPVKLN*HLSSVFVVSTKYH-PRYARYCSCSGCVRSTTACSFVSTRPQ*TCFVSLSPILH 238
           CP   +   +SV++   K   P+   YC+ S    STT+ S        TC V L+    
Sbjct: 60  CPKMASYCTNSVYLTLMKTQCPKTCGYCTSSSSTSSTTSSSS-------TC-VDLTNAST 111

Query: 239 GATPTGRVSESWCTNAV 289
           G +   R++ S+CTN++
Sbjct: 112 GVSDCTRMA-SYCTNSI 127


>Z32683-15|CAE17933.2|  375|Caenorhabditis elegans Hypothetical
           protein R07E5.17 protein.
          Length = 375

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 453 QFECPQEVTCVLELLTDSKYL 391
           +F CP E TC+ E+L    +L
Sbjct: 326 RFHCPSETTCIAEILYPFHFL 346


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,370,673
Number of Sequences: 27780
Number of extensions: 200404
Number of successful extensions: 603
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 589
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 603
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 820565746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)