Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_O01
         (227 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1259.01c |rps1802|rps18-2, SPCC825.06c|40S ribosomal protein...   101   1e-23
SPBC16D10.11c |rps1801|rps18-1|40S ribosomal protein S18|Schizos...   101   1e-23
SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1 |Sc...    25   1.0  
SPBC12C2.08 |dnm1||dynamin Dnm1|Schizosaccharomyces pombe|chr 2|...    24   2.4  
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9...    23   4.1  
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    23   5.4  
SPBC2G5.02c |||CK2 family regulatory subunit |Schizosaccharomyce...    22   9.5  
SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr 2|||...    22   9.5  
SPBC3E7.16c |leu3|SPBC4F6.03c|2-isopropylmalate synthase|Schizos...    22   9.5  

>SPCC1259.01c |rps1802|rps18-2, SPCC825.06c|40S ribosomal protein
           S18|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 152

 Score =  101 bits (242), Expect = 1e-23
 Identities = 47/63 (74%), Positives = 54/63 (85%)
 Frame = +2

Query: 38  VSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRF*ECT 217
           +SLV+PD FQHILR++NTN+DGK KVMFAMT IKGVGRRY+NIV KKADID+ KR  E T
Sbjct: 1   MSLVVPDNFQHILRLLNTNVDGKVKVMFAMTQIKGVGRRYANIVCKKADIDMSKRAGELT 60

Query: 218 EEE 226
            EE
Sbjct: 61  TEE 63


>SPBC16D10.11c |rps1801|rps18-1|40S ribosomal protein
           S18|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 152

 Score =  101 bits (242), Expect = 1e-23
 Identities = 47/63 (74%), Positives = 54/63 (85%)
 Frame = +2

Query: 38  VSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRF*ECT 217
           +SLV+PD FQHILR++NTN+DGK KVMFAMT IKGVGRRY+NIV KKADID+ KR  E T
Sbjct: 1   MSLVVPDNFQHILRLLNTNVDGKVKVMFAMTQIKGVGRRYANIVCKKADIDMSKRAGELT 60

Query: 218 EEE 226
            EE
Sbjct: 61  TEE 63


>SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 762

 Score = 25.4 bits (53), Expect = 1.0
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +2

Query: 101 GKRKVMFAMTAIKGVGRRYSNIVLKKADIDL 193
           GK+KV+     I  + R+YSN+  +KA+  L
Sbjct: 10  GKKKVIGNRQCILSLYRKYSNVQSRKAEDQL 40


>SPBC12C2.08 |dnm1||dynamin Dnm1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 781

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -1

Query: 104 CHQCSYS*YEEYAEIC 57
           CHQC    YEE  +IC
Sbjct: 458 CHQCVELVYEELMKIC 473


>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
           Srb9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1223

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -1

Query: 188 LYPPFSTQCWNI 153
           L+P F TQ WNI
Sbjct: 179 LHPSFDTQLWNI 190


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2100

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -3

Query: 156 YRRPTPLIAVIANITLRLPSMF 91
           +R P P +++I++I L   SMF
Sbjct: 358 WRNPLPQLSIISHIILSPTSMF 379


>SPBC2G5.02c |||CK2 family regulatory subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 254

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -1

Query: 197 CQDLYPPFSTQCWNID 150
           C DLY P S++  NID
Sbjct: 170 CLDLYAPSSSRYKNID 185


>SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 404

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +1

Query: 133 Y*RSWTSIFQHCVEKGGYRS 192
           Y  +W+ I  HC+    YRS
Sbjct: 149 YSHAWSPIASHCLIATAYRS 168


>SPBC3E7.16c |leu3|SPBC4F6.03c|2-isopropylmalate
           synthase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 584

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -1

Query: 56  LGSQETLWQFEFTP 15
           L S+ET W FE++P
Sbjct: 181 LESKETNWGFEYSP 194


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 878,849
Number of Sequences: 5004
Number of extensions: 13003
Number of successful extensions: 38
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38
length of database: 2,362,478
effective HSP length: 55
effective length of database: 2,087,258
effective search space used: 41745160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)