Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_O01
         (227 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0527 + 3915670-3915821,3916866-3917054,3917477-3917582           89   5e-19
07_01_0525 + 3904388-3904390,3904485-3904645,3905347-3905394,390...    88   8e-19
03_06_0283 - 32832572-32832677,32833343-32833531,32833582-328337...    88   8e-19
05_01_0010 - 66348-66629                                               26   4.9  
08_01_0317 - 2807275-2807487,2807573-2807737,2807818-2807987,280...    25   6.5  
12_02_0177 + 14938920-14940314                                         25   8.6  
06_03_1137 + 27903012-27904196,27904330-27904542,27905775-279058...    25   8.6  

>07_01_0527 + 3915670-3915821,3916866-3917054,3917477-3917582
          Length = 148

 Score = 89.0 bits (211), Expect = 5e-19
 Identities = 38/57 (66%), Positives = 50/57 (87%)
 Frame = +2

Query: 56  DKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRF*ECTEEE 226
           + FQHILR++NTN+DGK+K+MFA+T+IKG+GRR+SNI  KKADID++KR  E T EE
Sbjct: 3   EDFQHILRLLNTNVDGKQKIMFALTSIKGIGRRFSNIACKKADIDMNKRAGELTPEE 59


>07_01_0525 +
           3904388-3904390,3904485-3904645,3905347-3905394,
           3905714-3905902,3906872-3906977
          Length = 168

 Score = 88.2 bits (209), Expect = 8e-19
 Identities = 37/55 (67%), Positives = 50/55 (90%)
 Frame = +2

Query: 38  VSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKR 202
           +SL+  + FQHILR++NTN+DGK+K+MFA+T+IKGVGRR+SNI  KKADID++KR
Sbjct: 1   MSLIAGEDFQHILRLLNTNVDGKQKIMFALTSIKGVGRRFSNIACKKADIDMNKR 55


>03_06_0283 -
           32832572-32832677,32833343-32833531,32833582-32833796,
           32833900-32833902
          Length = 170

 Score = 88.2 bits (209), Expect = 8e-19
 Identities = 37/55 (67%), Positives = 50/55 (90%)
 Frame = +2

Query: 38  VSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKR 202
           +SL+  + FQHILR++NTN+DGK+K+MFA+T+IKGVGRR+SNI  KKADID++KR
Sbjct: 1   MSLIAGEDFQHILRLLNTNVDGKQKIMFALTSIKGVGRRFSNIACKKADIDMNKR 55


>05_01_0010 - 66348-66629
          Length = 93

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
 Frame = +2

Query: 98  DGKR--KVMFAMTAIKGVGRRYSNIVLKKADIDLDKR 202
           +GKR  K+  +  A+K + +   + V KKA IDL+K+
Sbjct: 57  EGKRFVKLRLSTKALKTIEKHGLDAVAKKAGIDLNKK 93


>08_01_0317 -
           2807275-2807487,2807573-2807737,2807818-2807987,
           2808256-2808724,2810581-2810727,2810968-2810976,
           2811054-2811890
          Length = 669

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 192 RSISAFFNTMLEYRRPTPLIAV 127
           +S   F + +L YRRP PL A+
Sbjct: 419 KSFKKFVDNLLPYRRPVPLDAL 440


>12_02_0177 + 14938920-14940314
          Length = 464

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -2

Query: 91  RIHNTKNMLKFVWDHKRH 38
           +I    +M KF WDH RH
Sbjct: 355 QIQRDLSMAKFDWDHPRH 372


>06_03_1137 +
           27903012-27904196,27904330-27904542,27905775-27905867,
           27905940-27906008,27906412-27906612,27906688-27906834,
           27907524-27907652,27909001-27909131,27909240-27909333
          Length = 753

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -2

Query: 94  VRIHNTKNMLKFVWDHKRHFGNLNSP 17
           VR   T+++LKF+ DHK    +L +P
Sbjct: 650 VRGQATRDLLKFILDHKTAAKSLPTP 675


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,415,598
Number of Sequences: 37544
Number of extensions: 77250
Number of successful extensions: 184
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 14,793,348
effective HSP length: 54
effective length of database: 12,765,972
effective search space used: 268085412
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)