Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_O01
         (227 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99281-11|CAB16517.1|  154|Caenorhabditis elegans Hypothetical p...    91   1e-19
Z82277-3|CAB05249.2|  495|Caenorhabditis elegans Hypothetical pr...    26   4.1  
Z75546-7|CAA99895.1|  566|Caenorhabditis elegans Hypothetical pr...    25   5.5  
Z74038-1|CAA98497.2|  578|Caenorhabditis elegans Hypothetical pr...    25   5.5  
Z73906-1|CAA98114.1|  540|Caenorhabditis elegans Hypothetical pr...    25   5.5  
AC024791-30|AAL32250.2| 2460|Caenorhabditis elegans Hypothetical...    25   5.5  
Z81540-5|CAB04405.2|  946|Caenorhabditis elegans Hypothetical pr...    25   7.2  
Z73103-3|CAA97423.1|  540|Caenorhabditis elegans Hypothetical pr...    25   9.6  
U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical pr...    25   9.6  

>Z99281-11|CAB16517.1|  154|Caenorhabditis elegans Hypothetical
           protein Y57G11C.16 protein.
          Length = 154

 Score = 91.1 bits (216), Expect = 1e-19
 Identities = 40/63 (63%), Positives = 54/63 (85%)
 Frame = +2

Query: 38  VSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRF*ECT 217
           +SL+IP+KFQHI R+MNTNIDG RKV +A+TAIKGVGRR++ +  +KAD+D++KR  E T
Sbjct: 1   MSLIIPEKFQHIHRVMNTNIDGNRKVPYALTAIKGVGRRFAFVCCRKADVDVNKRAGELT 60

Query: 218 EEE 226
           EE+
Sbjct: 61  EED 63


>Z82277-3|CAB05249.2|  495|Caenorhabditis elegans Hypothetical
           protein LLC1.3 protein.
          Length = 495

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = +2

Query: 98  DGKRKVMFAMTAIKGVGRR-YS-NIVLKKADIDLDKR 202
           DGK++ +   T +  VGRR Y+  + L    IDLD R
Sbjct: 283 DGKKQTLECDTLLVSVGRRPYTEGLGLSNVQIDLDNR 319


>Z75546-7|CAA99895.1|  566|Caenorhabditis elegans Hypothetical
           protein R05D11.8 protein.
          Length = 566

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +2

Query: 113 VMFAMTAIKGVGRRYSNIVLKKADIDLDKRF 205
           V+ A+   KG+G R  N +    D DLD  F
Sbjct: 217 VLDALNHYKGIGGRNKNDLADPIDFDLDSDF 247


>Z74038-1|CAA98497.2|  578|Caenorhabditis elegans Hypothetical
           protein F58B4.1a protein.
          Length = 578

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -1

Query: 203 NACQDLYPPFSTQCWN 156
           N+CQDL+P  +   WN
Sbjct: 530 NSCQDLHPNCAAYAWN 545


>Z73906-1|CAA98114.1|  540|Caenorhabditis elegans Hypothetical
           protein D2030.1 protein.
          Length = 540

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -2

Query: 76  KNMLKFVWDHKRHFGNLNSPLVPNS 2
           K M+KF WD  R +    + L PNS
Sbjct: 94  KQMIKFAWDGYRKYAWGENELRPNS 118


>AC024791-30|AAL32250.2| 2460|Caenorhabditis elegans Hypothetical
           protein Y47G6A.29 protein.
          Length = 2460

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = -2

Query: 79  TKNMLKFVWDHKRHFGNL 26
           TK    FVWDHKR F +L
Sbjct: 465 TKANAWFVWDHKRLFTDL 482


>Z81540-5|CAB04405.2|  946|Caenorhabditis elegans Hypothetical
           protein F46B3.5 protein.
          Length = 946

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -3

Query: 225 SSSVHSQKRLSRSISAFFNTMLEYRRPTPLIAVIAN 118
           S+S H ++ L +  ++ FNT L+   P P+   I N
Sbjct: 223 SNSTHLEEDLKKEFASKFNTDLDRPGPQPVPRNITN 258


>Z73103-3|CAA97423.1|  540|Caenorhabditis elegans Hypothetical
           protein C08F8.4 protein.
          Length = 540

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = -3

Query: 138 LIAVIANITLRLPSMFVFIIRRIC*NLSGITRDTLA 31
           LI V A+   RLP  F + I     N+SG   D LA
Sbjct: 289 LITVAASTVHRLPYYFAWTISDSICNISGFGYDGLA 324


>U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical protein
            C41A3.1 protein.
          Length = 7829

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 14/52 (26%), Positives = 26/52 (50%)
 Frame = +2

Query: 23   IQIAKVSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKK 178
            I++  V + IPDK  ++    N  I   R +++  +  +    R +NIVL +
Sbjct: 2658 IEVPAVEVQIPDKVVYLKECPNAVIRRHRNMVYVDSRAEQSPFRTANIVLNE 2709


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,855,437
Number of Sequences: 27780
Number of extensions: 74502
Number of successful extensions: 155
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 12,740,198
effective HSP length: 55
effective length of database: 11,212,298
effective search space used: 224245960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)