Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_N24
(260 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 62 9e-12
SPAC25B8.09 |||trans-aconitate 3-methyltransferase |Schizosaccha... 25 1.7
SPAC22F8.10c |sap145||U2 snRNP-associated protein Sap145 |Schizo... 25 2.2
SPCC16A11.03c |||DUF2009 protein|Schizosaccharomyces pombe|chr 3... 24 3.8
SPAC1039.04 |||nicotinic acid plasma membrane transporter |Schiz... 23 5.1
SPBC342.04 |||adhesion regulating molecule protein homolog|Schiz... 23 5.1
SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces ... 23 5.1
SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyce... 23 6.7
SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces... 23 6.7
SPCC70.04c |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 23 6.7
SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr 1|... 23 8.8
SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr ... 23 8.8
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 62.5 bits (145), Expect = 9e-12
Identities = 33/81 (40%), Positives = 47/81 (58%), Gaps = 3/81 (3%)
Frame = +2
Query: 8 ACLYQCYDLLKPDVVIELAWRHNIMDFAMPYLIQTVRELTTKVEKLEEADAKRSTESAED 187
A LY CY LL+ D+V+E++WR + D+A PY I E+ +KV LE+ R +E+
Sbjct: 1563 AILYTCYHLLRNDLVMEISWRKGLQDYAYPYFINFQCEMFSKVLNLEKDLKDRQAVKSEE 1622
Query: 188 EAKPAI---IMEPQLMLTAGP 241
E+ I I+ LMLT GP
Sbjct: 1623 ESASTIGAGILGNTLMLTQGP 1643
>SPAC25B8.09 |||trans-aconitate 3-methyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 251
Score = 25.0 bits (52), Expect = 1.7
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +2
Query: 2 HEACLYQCYDLLKPDVVIELAWRHNIMDFAMPYL 103
+E L + Y +LKP+ + L W NI D ++P++
Sbjct: 113 NEEALKEIYRVLKPNGKLALIW--NIRDNSVPWV 144
>SPAC22F8.10c |sap145||U2 snRNP-associated protein Sap145
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 24.6 bits (51), Expect = 2.2
Identities = 10/43 (23%), Positives = 24/43 (55%)
Frame = +2
Query: 68 RHNIMDFAMPYLIQTVRELTTKVEKLEEADAKRSTESAEDEAK 196
+H +DF + IQT + ++EK+ E + K+ + + ++ +
Sbjct: 8 KHCCLDFLLMAEIQTAQNPLKELEKILERNNKQKNKKSRNQVR 50
>SPCC16A11.03c |||DUF2009 protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 466
Score = 23.8 bits (49), Expect = 3.8
Identities = 19/64 (29%), Positives = 30/64 (46%)
Frame = +2
Query: 8 ACLYQCYDLLKPDVVIELAWRHNIMDFAMPYLIQTVRELTTKVEKLEEADAKRSTESAED 187
A +Y C D L PDV +L + DF P I+TV + K + L + K+ +
Sbjct: 121 AVMYMCQDSLIPDVRSQLGF-----DFVSP--IKTVYNVLEKHKLLGLLEEKQLLNNLLK 173
Query: 188 EAKP 199
++ P
Sbjct: 174 QSDP 177
>SPAC1039.04 |||nicotinic acid plasma membrane transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 507
Score = 23.4 bits (48), Expect = 5.1
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +1
Query: 13 SISVLRFIETRRRDRAR 63
SISV F + RRRD A+
Sbjct: 464 SISVYMFFDNRRRDNAQ 480
>SPBC342.04 |||adhesion regulating molecule protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 291
Score = 23.4 bits (48), Expect = 5.1
Identities = 8/25 (32%), Positives = 16/25 (64%)
Frame = +2
Query: 29 DLLKPDVVIELAWRHNIMDFAMPYL 103
++LKP + +L + ++D MPY+
Sbjct: 191 EILKPSNLTDLLCQEGVIDRLMPYM 215
>SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 805
Score = 23.4 bits (48), Expect = 5.1
Identities = 9/28 (32%), Positives = 18/28 (64%)
Frame = +2
Query: 116 RELTTKVEKLEEADAKRSTESAEDEAKP 199
+ L + + ++EADA + +S E +A+P
Sbjct: 656 QSLNSDLPNVDEADALMAVDSQEKQAEP 683
>SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 533
Score = 23.0 bits (47), Expect = 6.7
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +2
Query: 110 TVRELTTKVEKLEEADAKRSTESAEDEAKPAI 205
TV+E K+E AD + + E ++KP +
Sbjct: 374 TVKEEEQLAPKIESADLSITPQVTEHDSKPPV 405
>SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 591
Score = 23.0 bits (47), Expect = 6.7
Identities = 13/57 (22%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = +2
Query: 80 MDFAMPYLIQTVRELTTKVEKLEEADAKRSTESAEDEAKPAIIMEPQLM-LTAGPSM 247
+D P + +RE+ +++ K A A + E+E I +P+++ + P+M
Sbjct: 496 VDRREPNTGKNLREIESQLSKCMSAMASQRQNETEEETMARIQKDPEVLGILQDPAM 552
>SPCC70.04c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 244
Score = 23.0 bits (47), Expect = 6.7
Identities = 11/51 (21%), Positives = 22/51 (43%)
Frame = +2
Query: 101 LIQTVRELTTKVEKLEEADAKRSTESAEDEAKPAIIMEPQLMLTAGPSMPY 253
+I+T+RE + ++ + EAKP ++ P + + PY
Sbjct: 25 VIETMRETNESPKSQNPSEEATTVNELSCEAKPKLLFTPTKSSLSIGNFPY 75
>SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 767
Score = 22.6 bits (46), Expect = 8.8
Identities = 9/35 (25%), Positives = 16/35 (45%)
Frame = +2
Query: 59 LAWRHNIMDFAMPYLIQTVRELTTKVEKLEEADAK 163
++W H++ L+Q + + TK E D K
Sbjct: 160 VSWHHHVFSHIRDSLLQNLLYMFTKKRLYEPTDMK 194
>SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1026
Score = 22.6 bits (46), Expect = 8.8
Identities = 9/26 (34%), Positives = 14/26 (53%)
Frame = +1
Query: 31 FIETRRRDRARMETQYHGLCHALLNS 108
FI D++ + T YHG C L ++
Sbjct: 515 FISIGTFDKSNLPTLYHGSCALLTDN 540
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 962,596
Number of Sequences: 5004
Number of extensions: 14521
Number of successful extensions: 42
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 51430850
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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