Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_N24
(260 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0029 + 248725-248769,248870-249074,250040-250128,250237-25... 73 2e-14
11_01_0030 + 233285-233329,233439-233643,234637-234725,234834-23... 73 2e-14
06_03_0914 + 25920277-25920405,25920783-25920810,25920890-259209... 29 0.68
03_05_0632 + 26264150-26264195,26266139-26266623,26266650-262667... 28 1.2
07_01_0921 + 7753744-7753821,7753921-7754856,7755285-7755377,775... 27 2.1
06_03_1190 - 28274801-28275163,28275662-28275853,28275965-282760... 26 3.6
04_01_0088 - 955276-955989,956551-956736 26 3.6
09_04_0659 + 19282366-19282584,19282668-19282759,19282868-192829... 26 4.8
01_06_1078 + 34378985-34380064,34380155-34380283,34380362-343804... 26 4.8
08_01_0620 - 5416197-5416225,5416333-5416652,5417144-5417235,541... 25 6.3
05_04_0252 - 19386942-19387048,19388332-19388947 25 8.4
05_01_0146 - 953957-956278,956468-956786,957185-957213 25 8.4
>12_01_0029 + 248725-248769,248870-249074,250040-250128,250237-250315,
250429-250556,250764-250862,250953-251061,251301-251380,
251464-251691,251768-251833,251970-252086,252538-252735,
252847-252963,253056-253115,253228-253314,253419-253502,
253623-253757,253837-253899,253979-254083,254174-254286,
254374-254626,254715-254851,254970-255248,255352-256354,
256450-256935,257023-257193,257285-257470,257820-257942,
258024-258134,258225-258395
Length = 1708
Score = 73.3 bits (172), Expect = 2e-14
Identities = 35/86 (40%), Positives = 56/86 (65%), Gaps = 5/86 (5%)
Frame = +2
Query: 8 ACLYQCYDLLKPDVVIELAWRHNIMDFAMPYLIQTVRELTTKVEKL--EEADAKRSTESA 181
+CL+ CYDL++ DV +ELAW +N++DFA PYL+Q +RE T+KV++L + +++ +
Sbjct: 1582 SCLFICYDLIRADVALELAWMNNMVDFAFPYLLQFIREYTSKVDELVKDRIESQNEVRAK 1641
Query: 182 EDEAKPAII---MEPQLMLTAGPSMP 250
E E K + M QL+ A P+ P
Sbjct: 1642 EKEEKDLVAQQNMYAQLLPLALPAPP 1667
>11_01_0030 + 233285-233329,233439-233643,234637-234725,234834-234912,
235048-235175,235383-235481,235572-235680,235920-235999,
236083-236310,236387-236452,236589-236705,237142-237339,
237451-237567,237660-237719,237832-237918,238023-238106,
238233-238367,238446-238508,238588-238692,238781-238893,
238981-239233,239322-239458,239577-239855,239958-240960,
241054-241539,241627-241797,241890-242075,242426-242548,
242630-242740,242834-243004
Length = 1708
Score = 73.3 bits (172), Expect = 2e-14
Identities = 35/86 (40%), Positives = 56/86 (65%), Gaps = 5/86 (5%)
Frame = +2
Query: 8 ACLYQCYDLLKPDVVIELAWRHNIMDFAMPYLIQTVRELTTKVEKL--EEADAKRSTESA 181
+CL+ CYDL++ DV +ELAW +N++DFA PYL+Q +RE T+KV++L + +++ +
Sbjct: 1582 SCLFICYDLIRADVALELAWMNNMVDFAFPYLLQFIREYTSKVDELVKDRIESQNEVRAK 1641
Query: 182 EDEAKPAII---MEPQLMLTAGPSMP 250
E E K + M QL+ A P+ P
Sbjct: 1642 EKEEKDLVAQQNMYAQLLPLALPAPP 1667
>06_03_0914 +
25920277-25920405,25920783-25920810,25920890-25920990,
25921356-25921479,25921793-25921903,25922222-25922397,
25922766-25922848,25922935-25923007,25923630-25923695,
25923776-25923818,25924600-25924739,25924878-25925090,
25925397-25925481,25925558-25925852,25926855-25927110,
25927237-25927450,25927701-25927912,25928054-25928203
Length = 832
Score = 28.7 bits (61), Expect = 0.68
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = +2
Query: 74 NIMDFAMPYLIQTVRELT-TKVEKLEEADAKRSTESAEDEAKPAIIMEPQL 223
N+ +++ ++ VR T + EK EE S +S E + KP +IM+ Q+
Sbjct: 567 NVDNYSSGKHVRNVRLPTVSSTEKSEEEPIHSSEDSKESKVKPYVIMDHQI 617
>03_05_0632 +
26264150-26264195,26266139-26266623,26266650-26266739,
26266821-26267189
Length = 329
Score = 27.9 bits (59), Expect = 1.2
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = +2
Query: 113 VRELTTKVEKLEEADAKRSTESAEDEAKPAIIM 211
+REL K++ LEE A R TE+A PA M
Sbjct: 221 IRELQEKLKALEEQAAARVTEAAMATPSPARAM 253
>07_01_0921 +
7753744-7753821,7753921-7754856,7755285-7755377,
7755462-7755815
Length = 486
Score = 27.1 bits (57), Expect = 2.1
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -1
Query: 146 RASPLS*LIHGQSELSKAWQSP*YCVSMR 60
R S L + H Q ++SK W SP C+++R
Sbjct: 6 RFSDLLWMPHCQHKVSKIWDSPTNCINIR 34
>06_03_1190 -
28274801-28275163,28275662-28275853,28275965-28276088,
28276177-28276320,28276524-28276640,28277189-28277308,
28277433-28277521,28277609-28277685,28278250-28278322,
28278578-28279012,28280247-28280442,28281270-28281490,
28281591-28281703,28282552-28283146,28283236-28283418,
28283548-28283712,28283808-28284029
Length = 1142
Score = 26.2 bits (55), Expect = 3.6
Identities = 7/16 (43%), Positives = 13/16 (81%)
Frame = -1
Query: 197 VWLRPLRSPCYV*RQP 150
+W++PL + CY+ R+P
Sbjct: 343 IWIKPLTNECYMKREP 358
>04_01_0088 - 955276-955989,956551-956736
Length = 299
Score = 26.2 bits (55), Expect = 3.6
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +2
Query: 41 PDVVIELAWRHNIMDFAMPYLIQTVR 118
PDVVIEL RHN P ++ VR
Sbjct: 211 PDVVIELRHRHNHSSTPSPPQLREVR 236
>09_04_0659 +
19282366-19282584,19282668-19282759,19282868-19282958,
19283393-19283512,19283638-19283730,19283795-19283933,
19284060-19284141,19284229-19284361,19285024-19286010
Length = 651
Score = 25.8 bits (54), Expect = 4.8
Identities = 9/21 (42%), Positives = 11/21 (52%)
Frame = +1
Query: 175 ERRGRSQTGYYHGTSAHANCG 237
ER R G+Y G +H CG
Sbjct: 396 ERTSRDTGGFYGGDDSHGECG 416
>01_06_1078 +
34378985-34380064,34380155-34380283,34380362-34380430,
34380536-34380588,34381309-34381421,34381565-34382132,
34382520-34382580,34382624-34382665
Length = 704
Score = 25.8 bits (54), Expect = 4.8
Identities = 17/52 (32%), Positives = 27/52 (51%)
Frame = +2
Query: 80 MDFAMPYLIQTVRELTTKVEKLEEADAKRSTESAEDEAKPAIIMEPQLMLTA 235
+D + Y + V E +T VEK EE + ST ++E + ++ME L A
Sbjct: 488 IDISCTYCGEIVEENSTIVEKEEEIVEENSTSVEKEEWE--VVMEAMKRLVA 537
>08_01_0620 -
5416197-5416225,5416333-5416652,5417144-5417235,
5417304-5417394,5417489-5417577,5417812-5417929,
5418007-5418098,5418180-5418215,5418323-5418403,
5418510-5418617,5418809-5418901,5419045-5419146,
5419345-5419449,5419526-5419612,5419952-5420227
Length = 572
Score = 25.4 bits (53), Expect = 6.3
Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = +2
Query: 125 TTKVEKLEEADAKRSTESAEDE-AKPA 202
TTK K E + + S ES++DE AKPA
Sbjct: 100 TTKPVKQESSSDESSDESSDDEDAKPA 126
>05_04_0252 - 19386942-19387048,19388332-19388947
Length = 240
Score = 25.0 bits (52), Expect = 8.4
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +2
Query: 152 ADAKRSTESAEDEAKPAIIMEPQLMLTAGPSMP 250
ADA+ S +E+EA +I EP L A + P
Sbjct: 105 ADARASAAYSEEEAASTVIHEPMDELVAMAAEP 137
>05_01_0146 - 953957-956278,956468-956786,957185-957213
Length = 889
Score = 25.0 bits (52), Expect = 8.4
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +2
Query: 110 TVRELTTKVEKLEEADAKRSTESAEDEAKP 199
T +E +EK D K+ T S++DE +P
Sbjct: 809 TTQESNKIIEKQPHPDRKQETVSSKDELEP 838
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,456,112
Number of Sequences: 37544
Number of extensions: 99677
Number of successful extensions: 294
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 291
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 294
length of database: 14,793,348
effective HSP length: 65
effective length of database: 12,352,988
effective search space used: 259412748
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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