Samia BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_N24
         (260 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090819-2|BAC57914.1| 1022|Anopheles gambiae reverse transcript...    23   1.4  
AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.    22   3.2  
M93690-2|AAA29363.1| 1212|Anopheles gambiae unknown protein.           21   5.6  
AJ439353-9|CAD27931.1|  391|Anopheles gambiae transcription fact...    21   9.7  

>AB090819-2|BAC57914.1| 1022|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1022

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +3

Query: 114 SVN*LRKWRSSKRLTLNVAR 173
           S+N +R+W  S  L LN+++
Sbjct: 665 SINIIRQWMESVELQLNISK 684


>AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.
          Length = 1133

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +2

Query: 107 QTVRELTTKVEKLEEADAKRSTESAEDEAKPAIIMEPQL 223
           Q   +L T   K+++   KRSTES E+  +  + +   L
Sbjct: 849 QARHDLQTN-HKVKQQALKRSTESMEERKRTRVALSAAL 886


>M93690-2|AAA29363.1| 1212|Anopheles gambiae unknown protein.
          Length = 1212

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = +1

Query: 169 HGERRGRSQTGYYHG 213
           H  R GRSQ  Y HG
Sbjct: 19  HPLRTGRSQGWYMHG 33


>AJ439353-9|CAD27931.1|  391|Anopheles gambiae transcription factor
           protein.
          Length = 391

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +2

Query: 41  PDVVIELAWRHNIMDFAM 94
           PDV   L WR  I ++ M
Sbjct: 342 PDVARWLEWRKKIKEYRM 359


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 247,983
Number of Sequences: 2352
Number of extensions: 4031
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 563,979
effective HSP length: 54
effective length of database: 436,971
effective search space used: 13983072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)