Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_N22
         (394 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0659 - 24797477-24797533,24797614-24797726,24797814-247979...   100   4e-22
04_04_0506 - 25723809-25724299,25725082-25725237,25725316-257254...    96   1e-20
07_03_0481 - 18572206-18574314,18574591-18575185,18575304-185753...    27   4.1  
11_01_0715 + 5884867-5885154,5896513-5896704                           27   7.1  
02_05_1278 - 35416451-35416458,35416777-35416969,35416970-354170...    26   9.4  
02_04_0490 - 23411742-23412944,23413071-23413595,23413666-234137...    26   9.4  

>02_04_0659 -
           24797477-24797533,24797614-24797726,24797814-24797943,
           24798727-24798828,24798951-24798953
          Length = 134

 Score =  100 bits (240), Expect = 4e-22
 Identities = 51/122 (41%), Positives = 74/122 (60%)
 Frame = +1

Query: 25  MPFARYVEPGRVALVSDGPLKGKLVGVVDIIDQTRALIDGPGSGVSRQQIRLNQLHLTKF 204
           MPF R+VE GRVALV+ G   G+LV +VD++DQ RAL+D P   + R QI   +L LT  
Sbjct: 1   MPFKRFVEIGRVALVNYGKDYGRLVVIVDVVDQNRALVDAPD--MVRCQINFKRLSLTDI 58

Query: 205 RLIYPFTAPTRVVRKAWTDAQLNEKWAKSQWAQKLANKEKRAQMTDYDRFKLTSARVKRN 384
           ++          + KA  +A +  KW  S W +KL  +++RA + D+DRFK+  A++KR 
Sbjct: 59  KIDIKRVPKKTTLIKAMEEADVKNKWENSSWGKKLIVQKRRASLNDFDRFKVMLAKIKRG 118

Query: 385 RA 390
            A
Sbjct: 119 GA 120


>04_04_0506 -
           25723809-25724299,25725082-25725237,25725316-25725445,
           25726484-25726585,25726630-25726671
          Length = 306

 Score = 95.9 bits (228), Expect = 1e-20
 Identities = 48/117 (41%), Positives = 71/117 (60%)
 Frame = +1

Query: 28  PFARYVEPGRVALVSDGPLKGKLVGVVDIIDQTRALIDGPGSGVSRQQIRLNQLHLTKFR 207
           PF R+VE GRVALV+ G   G+LV +VD++DQ RAL+D P   + R QI   +L LT  +
Sbjct: 15  PFKRFVEIGRVALVNYGKDYGRLVVIVDVVDQNRALVDAP--DMVRCQINFKRLSLTDIK 72

Query: 208 LIYPFTAPTRVVRKAWTDAQLNEKWAKSQWAQKLANKEKRAQMTDYDRFKLTSARVK 378
           +          + KA  +A +  KW  S W +KL  +++RA + D+DRFK+  A++K
Sbjct: 73  IDIKRVPKKTTLIKAMEEADVKNKWENSSWGKKLIVQKRRASLNDFDRFKVMLAKIK 129


>07_03_0481 - 18572206-18574314,18574591-18575185,18575304-18575371,
            18577344-18577458,18578179-18578333,18578673-18580621,
            18580691-18581372,18581550-18581621,18582558-18583199,
            18583301-18583402,18585011-18585100
          Length = 2192

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +1

Query: 49   PGRVALVSDGPLKGKLVGVVDIIDQTRALIDGPGS 153
            P  VA  +DG L   ++G V  ID    L D PG+
Sbjct: 1159 PSTVAESTDGDLDNDMLGTVKSIDWNDELNDDPGA 1193


>11_01_0715 + 5884867-5885154,5896513-5896704
          Length = 159

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 18/54 (33%), Positives = 24/54 (44%)
 Frame = +1

Query: 4   HEACEDVMPFARYVEPGRVALVSDGPLKGKLVGVVDIIDQTRALIDGPGSGVSR 165
           H+A     P A  V  GR  L   G    +  G  DI+    AL +GP +G +R
Sbjct: 37  HDAYTGPAPTAMRVVSGRSLLDDGGDAVPRQFG--DIVALNNALTEGPSAGSTR 88


>02_05_1278 -
           35416451-35416458,35416777-35416969,35416970-35417056,
           35417851-35417892,35418542-35418617,35418954-35421589
          Length = 1013

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 14/46 (30%), Positives = 20/46 (43%)
 Frame = -2

Query: 189 ELVEANLLPRNTTAGTVNKCACLINDINYANQLSF*RSIRNQGDSP 52
           EL++ N+LP          C C++     A   SF   +RN G  P
Sbjct: 544 ELMDRNMLPDAVVYNVFINCLCMLGKFKEAK--SFLTEMRNMGLKP 587


>02_04_0490 -
           23411742-23412944,23413071-23413595,23413666-23413747,
           23413841-23414050,23414371-23414523,23415335-23415447,
           23415476-23415622
          Length = 810

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = -2

Query: 186 LVEANLLPRNTTAGTVNKCACLINDINYANQLSF*RSIRNQGD 58
           LVE   +P   +A   N C   ++DIN+ +++ +   +R Q D
Sbjct: 134 LVETRKVPEPNSAN--NACNSCLDDINWEDEIKYDPGLRKQID 174


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,388,838
Number of Sequences: 37544
Number of extensions: 202088
Number of successful extensions: 560
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 547
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 557
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 672845152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)