Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_N22
(394 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81461-2|CAB03835.1| 135|Caenorhabditis elegans Hypothetical pr... 100 3e-22
U41549-2|AAA83282.1| 208|Caenorhabditis elegans Histone h1 like... 31 0.39
AF012253-1|AAB66471.1| 208|Caenorhabditis elegans histone H1.3 ... 31 0.39
Z72512-6|CAD44143.2| 657|Caenorhabditis elegans Hypothetical pr... 30 0.51
Z66567-2|CAA91488.1| 1118|Caenorhabditis elegans Hypothetical pr... 29 1.2
U00068-1|AAA50745.1| 85|Caenorhabditis elegans Hypothetical pr... 29 1.6
X01005-1|CAA25498.1| 273|Caenorhabditis elegans protein ( Caeno... 28 2.1
U39743-1|AAA80436.2| 314|Caenorhabditis elegans Hypothetical pr... 28 2.1
AF125450-4|AAD12818.1| 343|Caenorhabditis elegans Hypothetical ... 28 2.1
AF067947-2|AAC19229.2| 273|Caenorhabditis elegans Hypothetical ... 28 2.1
AF067947-1|AAC19233.1| 273|Caenorhabditis elegans Hypothetical ... 28 2.1
AF016682-7|AAB66191.2| 343|Caenorhabditis elegans Hypothetical ... 28 2.1
AC006669-1|AAF39909.1| 1203|Caenorhabditis elegans Hypothetical ... 28 2.1
AL110500-19|CAB60433.2| 468|Caenorhabditis elegans Hypothetical... 28 2.7
Z98866-16|CAB11565.2| 1159|Caenorhabditis elegans Hypothetical p... 27 4.8
AF016447-1|AAG24019.1| 341|Caenorhabditis elegans Seven tm rece... 26 8.4
>Z81461-2|CAB03835.1| 135|Caenorhabditis elegans Hypothetical
protein C04F12.4 protein.
Length = 135
Score = 100 bits (240), Expect = 3e-22
Identities = 51/121 (42%), Positives = 75/121 (61%)
Frame = +1
Query: 25 MPFARYVEPGRVALVSDGPLKGKLVGVVDIIDQTRALIDGPGSGVSRQQIRLNQLHLTKF 204
M F R V+ GRV ++ G +GKL +V++ID R IDGP S V+R L L LTKF
Sbjct: 1 MVFNRVVQIGRVVFIASGKDQGKLAAIVNVIDGNRVQIDGPSSDVTRTVRNLKDLQLTKF 60
Query: 205 RLIYPFTAPTRVVRKAWTDAQLNEKWAKSQWAQKLANKEKRAQMTDYDRFKLTSARVKRN 384
L T+ V+ A+ A++ E + K+QWA+K+A + RA++TD++R+KL A+ RN
Sbjct: 61 VLKLRVGQRTKGVKAAFDAAKVTENFQKTQWAKKIAQRAIRAKLTDFERYKLMKAKQMRN 120
Query: 385 R 387
R
Sbjct: 121 R 121
>U41549-2|AAA83282.1| 208|Caenorhabditis elegans Histone h1 like
protein 3 protein.
Length = 208
Score = 30.7 bits (66), Expect = 0.39
Identities = 17/40 (42%), Positives = 23/40 (57%)
Frame = +1
Query: 262 AQLNEKWAKSQWAQKLANKEKRAQMTDYDRFKLTSARVKR 381
A EK AK AQK A EK+A+ T + K T+ +VK+
Sbjct: 127 AATGEKKAKKPVAQKAATGEKKAKKTTATKTKKTADKVKK 166
>AF012253-1|AAB66471.1| 208|Caenorhabditis elegans histone H1.3
protein.
Length = 208
Score = 30.7 bits (66), Expect = 0.39
Identities = 17/40 (42%), Positives = 23/40 (57%)
Frame = +1
Query: 262 AQLNEKWAKSQWAQKLANKEKRAQMTDYDRFKLTSARVKR 381
A EK AK AQK A EK+A+ T + K T+ +VK+
Sbjct: 127 AATGEKKAKKPVAQKAATGEKKAKKTTATKTKKTADKVKK 166
>Z72512-6|CAD44143.2| 657|Caenorhabditis elegans Hypothetical
protein R07B5.9 protein.
Length = 657
Score = 30.3 bits (65), Expect = 0.51
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Frame = -3
Query: 146 GPSISARV*---SMISTTPTNFPFRGPSETRATRPGS 45
GPS S+ V SMI+TTP PF P+ + PGS
Sbjct: 374 GPSTSSHVTPQMSMINTTPQQPPFSHPNSQQQATPGS 410
>Z66567-2|CAA91488.1| 1118|Caenorhabditis elegans Hypothetical
protein ZK455.2 protein.
Length = 1118
Score = 29.1 bits (62), Expect = 1.2
Identities = 13/24 (54%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Frame = +3
Query: 195 NKIP-PNIPFYSTHTCCQKSVDRR 263
N+ P P+ P+YST T C K+V RR
Sbjct: 53 NRSPSPHEPYYSTRTRCSKNVRRR 76
>U00068-1|AAA50745.1| 85|Caenorhabditis elegans Hypothetical
protein W04D12.1 protein.
Length = 85
Score = 28.7 bits (61), Expect = 1.6
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +1
Query: 271 NEKWAKSQWAQKLANKEKRAQMTDYDRFK 357
N KW + A K+A KEK+ +M D ++ K
Sbjct: 43 NRKWKRIDSAVKVAKKEKKKKMKDEEKKK 71
>X01005-1|CAA25498.1| 273|Caenorhabditis elegans protein (
Caenorhabditis eleganstransposable element Tc1. ).
Length = 273
Score = 28.3 bits (60), Expect = 2.1
Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Frame = +1
Query: 145 PGSGVSRQQIRLNQLHLTKFRLIYPFTAP-TRVVRKAWTDAQLNEKWAKSQWAQKLANKE 321
P R++++ LH K + PF + R+ R AW A L +W + +WA+ + + E
Sbjct: 32 PSKRTVRRRLQQAGLHGRK-PVKKPFISKKNRMARVAWAKAHL--RWGRQEWAKHIWSDE 88
Query: 322 KRAQMTDYD 348
+ + D
Sbjct: 89 SKFNLFGSD 97
>U39743-1|AAA80436.2| 314|Caenorhabditis elegans Hypothetical
protein R173.2 protein.
Length = 314
Score = 28.3 bits (60), Expect = 2.1
Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Frame = +1
Query: 145 PGSGVSRQQIRLNQLHLTKFRLIYPFTAP-TRVVRKAWTDAQLNEKWAKSQWAQKLANKE 321
P R++++ LH K + PF + R+ R AW A L +W + +WA+ + + E
Sbjct: 73 PSKRTVRRRLQQAGLHGRK-PVKKPFISKKNRMARVAWAKAHL--RWGRQEWAKHIWSDE 129
Query: 322 KRAQMTDYD 348
+ + D
Sbjct: 130 SKFNLFGSD 138
>AF125450-4|AAD12818.1| 343|Caenorhabditis elegans Hypothetical
protein Y39F10A.4 protein.
Length = 343
Score = 28.3 bits (60), Expect = 2.1
Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Frame = +1
Query: 145 PGSGVSRQQIRLNQLHLTKFRLIYPFTAP-TRVVRKAWTDAQLNEKWAKSQWAQKLANKE 321
P R++++ LH K + PF + R+ R AW A L +W + +WA+ + + E
Sbjct: 102 PSKRTVRRRLQQAGLHGRK-PVKKPFISKKNRMARVAWAKAHL--RWGRQEWAKHIWSDE 158
Query: 322 KRAQMTDYD 348
+ + D
Sbjct: 159 SKFNLFGSD 167
>AF067947-2|AAC19229.2| 273|Caenorhabditis elegans Hypothetical
protein T10B5.9 protein.
Length = 273
Score = 28.3 bits (60), Expect = 2.1
Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Frame = +1
Query: 145 PGSGVSRQQIRLNQLHLTKFRLIYPFTAP-TRVVRKAWTDAQLNEKWAKSQWAQKLANKE 321
P R++++ LH K + PF + R+ R AW A L +W + +WA+ + + E
Sbjct: 32 PSKRTVRRRLQQAGLHGRK-PVKKPFISKKNRMARVAWAKAHL--RWGRQEWAKHIWSDE 88
Query: 322 KRAQMTDYD 348
+ + D
Sbjct: 89 SKFNLFGSD 97
>AF067947-1|AAC19233.1| 273|Caenorhabditis elegans Hypothetical
protein T10B5.1 protein.
Length = 273
Score = 28.3 bits (60), Expect = 2.1
Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Frame = +1
Query: 145 PGSGVSRQQIRLNQLHLTKFRLIYPFTAP-TRVVRKAWTDAQLNEKWAKSQWAQKLANKE 321
P R++++ LH K + PF + R+ R AW A L +W + +WA+ + + E
Sbjct: 32 PSKRTVRRRLQQAGLHGRK-PVKKPFISKKNRMARVAWAKAHL--RWGRQEWAKHIWSDE 88
Query: 322 KRAQMTDYD 348
+ + D
Sbjct: 89 SKFNLFGSD 97
>AF016682-7|AAB66191.2| 343|Caenorhabditis elegans Hypothetical
protein T07D3.8 protein.
Length = 343
Score = 28.3 bits (60), Expect = 2.1
Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Frame = +1
Query: 145 PGSGVSRQQIRLNQLHLTKFRLIYPFTAP-TRVVRKAWTDAQLNEKWAKSQWAQKLANKE 321
P R++++ LH K + PF + R+ R AW A L +W + +WA+ + + E
Sbjct: 102 PSKRTVRRRLQQAGLHGRK-PVKKPFISKKNRMARVAWAKAHL--RWGRQEWAKHIWSDE 158
Query: 322 KRAQMTDYD 348
+ + D
Sbjct: 159 SKFNLFGSD 167
>AC006669-1|AAF39909.1| 1203|Caenorhabditis elegans Hypothetical
protein H43E16.1 protein.
Length = 1203
Score = 28.3 bits (60), Expect = 2.1
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = -3
Query: 158 TPLPGPSISARV*SMIST-TPTNFPFRGPSETRATRPGST*RAKGMTSSQAS 6
T P+ +A++ S T T T PS T PG + + GMT+SQAS
Sbjct: 386 TTTGNPTTTAQLSSSSKTLTSTQTTQGSPSTVSQTTPGVSSASTGMTTSQAS 437
>AL110500-19|CAB60433.2| 468|Caenorhabditis elegans Hypothetical
protein Y87G2A.13 protein.
Length = 468
Score = 27.9 bits (59), Expect = 2.7
Identities = 22/87 (25%), Positives = 40/87 (45%)
Frame = -3
Query: 338 VICALFSLFANFCAHWLLAHFSFS*ASVHAFLTTRVGAVKGYIRRNFVKWSWLRRICCRE 159
+I + S F +H L AH + + V A + G VK Y + + + + R +CC
Sbjct: 318 IIGWVLSKFLTRVSH-LQAHLNLAYDKV-AEMRAEAGKVKNYTIQAMI-YRYYRYLCCAA 374
Query: 158 TPLPGPSISARV*SMISTTPTNFPFRG 78
GP++ A + +++ T N + G
Sbjct: 375 LQYFGPAVLALLFALLLKTTGNLSWIG 401
>Z98866-16|CAB11565.2| 1159|Caenorhabditis elegans Hypothetical
protein Y49E10.19 protein.
Length = 1159
Score = 27.1 bits (57), Expect = 4.8
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +1
Query: 286 KSQWAQKLANKEKRAQMTDYDRFKLTSARV 375
++QWA ++ RA +T+YDR K R+
Sbjct: 807 EAQWAMLRHVEKHRALLTEYDRLKRDGPRI 836
>AF016447-1|AAG24019.1| 341|Caenorhabditis elegans Seven tm
receptor protein 31 protein.
Length = 341
Score = 26.2 bits (55), Expect = 8.4
Identities = 15/33 (45%), Positives = 16/33 (48%)
Frame = -3
Query: 278 FSFS*ASVHAFLTTRVGAVKGYIRRNFVKWSWL 180
FSF VH F + G G I N VKW WL
Sbjct: 57 FSFIEMLVHPFFHSFNG---GLINFNMVKWKWL 86
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,735,379
Number of Sequences: 27780
Number of extensions: 172565
Number of successful extensions: 495
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 492
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 598330768
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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