Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_N21
(400 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_03_0150 + 10810322-10810380,10810530-10810593,10810803-108110... 29 1.4
01_02_0063 - 10746968-10747783,10747995-10748222 29 1.8
08_02_0796 - 21300251-21300373,21300846-21301721 28 2.4
07_03_0851 + 22012836-22014017,22016668-22016734,22016774-220168... 28 2.4
02_03_0235 - 16702768-16702956,16703956-16704492,16705084-167052... 28 3.1
12_02_0819 + 23432681-23432998,23433118-23433348 27 4.1
09_04_0472 - 17895285-17896459,17897113-17897271,17897374-178977... 27 4.1
08_02_0158 - 13392323-13392545,13392618-13392739 27 4.1
04_04_0457 + 25359486-25359571,25360690-25360782,25361561-253616... 27 4.1
03_06_0144 - 31969609-31969866,31969961-31970371,31970472-319705... 27 5.5
02_04_0460 - 23118221-23118406,23118417-23118671,23118763-231188... 27 5.5
01_05_0289 + 20482472-20482603,20483175-20483345,20483501-204835... 27 5.5
12_02_1169 - 26655170-26655332,26655429-26655504,26655603-266557... 27 7.2
02_05_1357 + 35899480-35899578,35900247-35900334,35900438-359005... 27 7.2
01_01_0443 - 3314002-3314565 27 7.2
12_02_1064 - 25771870-25772102,25772222-25772375,25772487-257725... 26 9.5
01_02_0058 - 10699702-10700517,10700997-10701206 26 9.5
>11_03_0150 +
10810322-10810380,10810530-10810593,10810803-10811047,
10811627-10811747,10811821-10811895,10811986-10812112,
10812194-10812939,10813065-10813195,10813547-10813636,
10814000-10814105
Length = 587
Score = 29.1 bits (62), Expect = 1.4
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = -2
Query: 159 QLEDSERLRGPGHEYRDQNSRYQAESS 79
+LE SER R P YR Q+S+ Q SS
Sbjct: 421 RLESSERQRPPSQSYRPQSSQGQRPSS 447
>01_02_0063 - 10746968-10747783,10747995-10748222
Length = 347
Score = 28.7 bits (61), Expect = 1.8
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -2
Query: 123 HEYRDQNSRYQAESSDSLLPSKRQPTPE 40
HEY D + + ++ SDSLL + P PE
Sbjct: 303 HEYADNATLWDSDFSDSLLKLSQLPMPE 330
>08_02_0796 - 21300251-21300373,21300846-21301721
Length = 332
Score = 28.3 bits (60), Expect = 2.4
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -2
Query: 159 QLEDSERLRGPGHEYRDQNSRYQAESSDS 73
Q +++R+RGPGH + D + +S DS
Sbjct: 145 QSPETDRVRGPGHHHDDDAAADDDDSEDS 173
>07_03_0851 +
22012836-22014017,22016668-22016734,22016774-22016868,
22017304-22017717
Length = 585
Score = 28.3 bits (60), Expect = 2.4
Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 3/72 (4%)
Frame = -2
Query: 219 GEYGGAFHPRFSLSAQISCNQLEDSERLRGPGHEYRDQNSRYQAESSDSLLPSK---RQP 49
G GG F +S+ + + E E++ H YR R E L S+ +
Sbjct: 315 GSVGGTFDLHYSIWGKEGATRREQMEKIIPLDHGYR-YYIRGAMEKHLLLARSRGEGEED 373
Query: 48 TPELPDTSCWSV 13
TPE PD C+S+
Sbjct: 374 TPEEPDLECFSL 385
>02_03_0235 -
16702768-16702956,16703956-16704492,16705084-16705233,
16705310-16705625,16707005-16707286,16707895-16707971,
16708121-16708186,16708700-16709246,16709435-16709565,
16709642-16709746,16709859-16710039,16710123-16710185,
16711000-16711109,16711576-16711638,16711859-16712191
Length = 1049
Score = 27.9 bits (59), Expect = 3.1
Identities = 16/31 (51%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = -3
Query: 131 DLVMNTEIKIVVIRQNHRIPFYH-PNGSQHQ 42
DL T++ IVV HRIP YH N SQ Q
Sbjct: 827 DLSRKTDLVIVVHNLAHRIPQYHQSNTSQPQ 857
>12_02_0819 + 23432681-23432998,23433118-23433348
Length = 182
Score = 27.5 bits (58), Expect = 4.1
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Frame = +3
Query: 30 YLVILVLAAVWMVEGNPMILPD--NDYFDLGIHDQVLG 137
Y V AA W V G +LP+ +FD G HDQ G
Sbjct: 73 YSAFEVAAAAWEVAGGATLLPEAMQLWFDFG-HDQGFG 109
>09_04_0472 -
17895285-17896459,17897113-17897271,17897374-17897794,
17898520-17898552,17898902-17899384
Length = 756
Score = 27.5 bits (58), Expect = 4.1
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +3
Query: 201 TLHHILHGNDNKHEQDDNSSKAKHPAAE 284
TL ++HGN N+H D + H +AE
Sbjct: 513 TLFSLIHGNHNQHISLDTRLRIAHESAE 540
>08_02_0158 - 13392323-13392545,13392618-13392739
Length = 114
Score = 27.5 bits (58), Expect = 4.1
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +2
Query: 311 TQRAAENYERSQSTTGNINTFSIPTRHP 394
T R+ +N S+S TG+ N F++ HP
Sbjct: 30 TSRSTDNSMTSRSITGSNNPFALQIEHP 57
>04_04_0457 +
25359486-25359571,25360690-25360782,25361561-25361622,
25361758-25361816,25363624-25363733,25364795-25364829,
25365469-25365546,25365952-25366005,25366277-25366362,
25366468-25366571,25366986-25367054,25367135-25367250,
25367387-25367421,25367512-25367654,25367808-25367930,
25368463-25368556
Length = 448
Score = 27.5 bits (58), Expect = 4.1
Identities = 15/30 (50%), Positives = 18/30 (60%)
Frame = -2
Query: 390 WRVGMLNVFIFPVVL*LRS*FSAALCVRVR 301
W +G +NV IFPV L L S F LC +R
Sbjct: 35 WSLGKINVLIFPVDLFLGSYF---LCFTIR 61
>03_06_0144 -
31969609-31969866,31969961-31970371,31970472-31970542,
31970637-31970723,31970816-31971389
Length = 466
Score = 27.1 bits (57), Expect = 5.5
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = -2
Query: 300 YPF*RSLQQDAWLSNYCRPVHACCHYHGEYGGAFHPR 190
+P+ S +D L + RP A G+YGG PR
Sbjct: 312 HPWPASFMEDDSLVEWARPAMARALADGDYGGVADPR 348
>02_04_0460 -
23118221-23118406,23118417-23118671,23118763-23118851,
23119527-23119605,23121317-23121484,23121760-23122137
Length = 384
Score = 27.1 bits (57), Expect = 5.5
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -2
Query: 117 YRDQNSRYQAESSDSLLPSKRQPTPELP 34
Y D+ SR+++ SSD L P P +LP
Sbjct: 67 YLDELSRWESLSSDVLAPLPAAPAADLP 94
>01_05_0289 +
20482472-20482603,20483175-20483345,20483501-20483530,
20483640-20483847,20483952-20484033,20484128-20484236,
20484329-20484745
Length = 382
Score = 27.1 bits (57), Expect = 5.5
Identities = 16/58 (27%), Positives = 26/58 (44%)
Frame = +3
Query: 21 NMRYLVILVLAAVWMVEGNPMILPDNDYFDLGIHDQVLGVFPNLLTDYMKFERSVRSV 194
N ++L + V+G +L ++ H V GV P L+ Y F SVR++
Sbjct: 69 NFKWLDGFTIQGTGTVDGQSTLLRSVSPANVSQHWYVSGVKPTLIRFYSSFNVSVRNI 126
>12_02_1169 -
26655170-26655332,26655429-26655504,26655603-26655715,
26655808-26655913,26656001-26656235,26656415-26656573,
26657279-26657377,26657472-26657568,26657650-26657768,
26657860-26658000,26658100-26658184,26658287-26658488,
26659274-26659379
Length = 566
Score = 26.6 bits (56), Expect = 7.2
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = -2
Query: 186 SLSAQISCNQLEDSERLRGPGHEYRDQNSRYQAESSDSLLPSKRQPT 46
SL A +Q D E++RGP + + ES + L K+Q T
Sbjct: 368 SLEASFRLSQEYDEEKVRGPPVDANHEQLSSVVESINDTLIEKKQDT 414
>02_05_1357 +
35899480-35899578,35900247-35900334,35900438-35900592,
35900652-35900715,35902910-35902974,35903061-35903126,
35903644-35903745
Length = 212
Score = 26.6 bits (56), Expect = 7.2
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +1
Query: 268 SILLQRSSERVSNTDTKGCRKLRAQSKHHW 357
S++ + S E VS K CR L S H W
Sbjct: 86 SLISKASYENVSKKAIKSCRPLSLLSLHEW 115
>01_01_0443 - 3314002-3314565
Length = 187
Score = 26.6 bits (56), Expect = 7.2
Identities = 13/53 (24%), Positives = 22/53 (41%)
Frame = -2
Query: 225 YHGEYGGAFHPRFSLSAQISCNQLEDSERLRGPGHEYRDQNSRYQAESSDSLL 67
+ G+ A H R S + CN + G RD+ R+ E D+++
Sbjct: 118 FMGDPSKACHVRLQASPEFKCNNPTNINYSSIEGASLRDEGKRWTGEGYDNVM 170
>12_02_1064 -
25771870-25772102,25772222-25772375,25772487-25772569,
25772669-25772762,25773647-25773799,25774388-25774510
Length = 279
Score = 26.2 bits (55), Expect = 9.5
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +3
Query: 120 HDQVLGVFPNLLTDYMKFERSVRSVGET 203
H+Q L V P +TD E + S+GET
Sbjct: 74 HEQRLAVLPLDVTDESTIEAAAASIGET 101
>01_02_0058 - 10699702-10700517,10700997-10701206
Length = 341
Score = 26.2 bits (55), Expect = 9.5
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = -2
Query: 159 QLEDSERLRGPGHEYRDQNSRYQAESSDSLLPSKRQPTP 43
QL + RG HEY D + + + + SLL + P P
Sbjct: 286 QLLTQDEARGHVHEYADNAALWDHDFAASLLKLSKLPMP 324
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,817,620
Number of Sequences: 37544
Number of extensions: 239406
Number of successful extensions: 810
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 791
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 809
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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